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The map label for this gene is cydA [H]

Identifier: 54294146

GI number: 54294146

Start: 1351973

End: 1353505

Strand: Direct

Name: cydA [H]

Synonym: lpl1210

Alternate gene names: 54294146

Gene position: 1351973-1353505 (Clockwise)

Preceding gene: 54294136

Following gene: 54294147

Centisome position: 40.41

GC content: 40.38

Gene sequence:

>1533_bases
ATGATTCCAGCTGCTGAAGTTGTTGATTTATCAAGGTTACAATTTGCATTAACTGCACTATATCATTTTCTATTTGTACC
CCTTACGTTGGGGTTATCGGTTATGTTAGCTATCATGGAGACAGTGTATGTAATGACTGGCCGTGATCTCTGGAAGAAAA
TGGTCAAATACTGGGGGGTTTTGTTTGGGATTAATTTTGTTTTGGGAGTTGCAACCGGTCTGACTATGGAATTCCAGTTT
GGTACTAACTGGGCTTACTATTCACATTATGTGGGAGATGTATTTGGTGCTCCATTGGCGATCGAAGGGCTAATGGCCTT
TTTTCTGGAAGCTACCTTTGTGGGTTTATTTTTCTTTGGCTGGAACAGATTGTCAAAATTGCAGCATCTGACCTCAACAT
GGTTATTAGCTTTGGGCACTAATCTTTCAGCATTGTGGATTTTAATTGCTAATGGTTGGATGCAACATCCTGTAGGCGCC
TATTTTGATTACCAAACGATGAGAATGGAGGTCAGCAGTTTCTACGAAATGCTGTTTAATCCTGTTGCTCAGGCCAAGTT
TGTGCATACCATCAGTGCGGGATATGTGACAGGAGCCATGTTTGTCTTATCCATAAGTGCCTATTTTCTTTTGCGGGGAC
GAAATAAAGCGTTTGCCAAACGCTCAATGACGGTCGCAGTTTCTTTTGGTTTGGCTTCGGCATTGTCTGTTGTGGTACTG
GGCGATGAGAGCGGTTATGTTGCCAATGAAAACCAAAAAATGAAGTTGGCTACTATGGAGGCGATGTGGCATACCGAGAA
AGCTCCCGCCAATTTGACTGTTTTTGGAATACCAGATGAGAAGACTCTAACGACAAAATATGCAATAGATATTCCTTATG
CCCTTGGTATTATTGCCACGCGTTCGTTCAATACTCCTTTACAAGGTATTATTGAATTAATTGAGGAAGGAAAATTAAAA
ATCAAAGATGGGATGATCGCATACGATGCATTGAAGGTTTTACAGAAAGATCCAAAGAATGAACAAGCTAAGGCTGTTTT
TACAAAACATAGCGAAAATCTTGGTTATGCTTTATTGCTCAAGAAGTATACTGAGAATGTGACGGATGCTACTGAGGAGC
AAATAAATCAAGCAGCGCACGATCTCAAGCCTAAAGTCCTGCCGATGTTCTTTTCTTTCAGAATTATGGTTGCGTGTGGA
ATATATTTTATACTTCTTTTCGCAACCGGATTTTATTTATCGGTAAGGCATAGGTTGGAAAAGACAACCTGGTATCACAG
AATTGCATTTTATTCTTTGCCTTTACCATGGGTAGCGGCTGAATTAGGTTGGATAGTAGCGGAATATGGTCGTCAACCCT
GGGTTGTTGAGGGTATTCTGCCTACTTTTATGGGAGCCTCCTCTTTAACATCAGGACAAGTAATGACTTCAATCGCAGGT
TTTGTATTATTTTATACTGTTCTTGCAATTGTTGAGATTTACTTGATGGTCAAATACATACGTCTTGGCCCAGATGGTAT
GAATCATCATTGA

Upstream 100 bases:

>100_bases
TGTGTCAGAGGAATGCATCCTGAGTTGTCTAGTAATAAAGAATGGTTGTTAGGAAAAGAAGAACAAACAGTACTTACCCA
AAATAACAAGAGGTAGTTTT

Downstream 100 bases:

>100_bases
TGAAAGGAGAATCAAATGCCTTTGGATTATGAAACACTCAGAATAATTTGGTGGTTGTTAATAGGTATTTTGCTTATTGG
CTTTGCCATTATGGATGGAT

Product: cytochrome d ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit I; Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 510; Mature: 510

Protein sequence:

>510_residues
MIPAAEVVDLSRLQFALTALYHFLFVPLTLGLSVMLAIMETVYVMTGRDLWKKMVKYWGVLFGINFVLGVATGLTMEFQF
GTNWAYYSHYVGDVFGAPLAIEGLMAFFLEATFVGLFFFGWNRLSKLQHLTSTWLLALGTNLSALWILIANGWMQHPVGA
YFDYQTMRMEVSSFYEMLFNPVAQAKFVHTISAGYVTGAMFVLSISAYFLLRGRNKAFAKRSMTVAVSFGLASALSVVVL
GDESGYVANENQKMKLATMEAMWHTEKAPANLTVFGIPDEKTLTTKYAIDIPYALGIIATRSFNTPLQGIIELIEEGKLK
IKDGMIAYDALKVLQKDPKNEQAKAVFTKHSENLGYALLLKKYTENVTDATEEQINQAAHDLKPKVLPMFFSFRIMVACG
IYFILLFATGFYLSVRHRLEKTTWYHRIAFYSLPLPWVAAELGWIVAEYGRQPWVVEGILPTFMGASSLTSGQVMTSIAG
FVLFYTVLAIVEIYLMVKYIRLGPDGMNHH

Sequences:

>Translated_510_residues
MIPAAEVVDLSRLQFALTALYHFLFVPLTLGLSVMLAIMETVYVMTGRDLWKKMVKYWGVLFGINFVLGVATGLTMEFQF
GTNWAYYSHYVGDVFGAPLAIEGLMAFFLEATFVGLFFFGWNRLSKLQHLTSTWLLALGTNLSALWILIANGWMQHPVGA
YFDYQTMRMEVSSFYEMLFNPVAQAKFVHTISAGYVTGAMFVLSISAYFLLRGRNKAFAKRSMTVAVSFGLASALSVVVL
GDESGYVANENQKMKLATMEAMWHTEKAPANLTVFGIPDEKTLTTKYAIDIPYALGIIATRSFNTPLQGIIELIEEGKLK
IKDGMIAYDALKVLQKDPKNEQAKAVFTKHSENLGYALLLKKYTENVTDATEEQINQAAHDLKPKVLPMFFSFRIMVACG
IYFILLFATGFYLSVRHRLEKTTWYHRIAFYSLPLPWVAAELGWIVAEYGRQPWVVEGILPTFMGASSLTSGQVMTSIAG
FVLFYTVLAIVEIYLMVKYIRLGPDGMNHH
>Mature_510_residues
MIPAAEVVDLSRLQFALTALYHFLFVPLTLGLSVMLAIMETVYVMTGRDLWKKMVKYWGVLFGINFVLGVATGLTMEFQF
GTNWAYYSHYVGDVFGAPLAIEGLMAFFLEATFVGLFFFGWNRLSKLQHLTSTWLLALGTNLSALWILIANGWMQHPVGA
YFDYQTMRMEVSSFYEMLFNPVAQAKFVHTISAGYVTGAMFVLSISAYFLLRGRNKAFAKRSMTVAVSFGLASALSVVVL
GDESGYVANENQKMKLATMEAMWHTEKAPANLTVFGIPDEKTLTTKYAIDIPYALGIIATRSFNTPLQGIIELIEEGKLK
IKDGMIAYDALKVLQKDPKNEQAKAVFTKHSENLGYALLLKKYTENVTDATEEQINQAAHDLKPKVLPMFFSFRIMVACG
IYFILLFATGFYLSVRHRLEKTTWYHRIAFYSLPLPWVAAELGWIVAEYGRQPWVVEGILPTFMGASSLTSGQVMTSIAG
FVLFYTVLAIVEIYLMVKYIRLGPDGMNHH

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=503, Percent_Identity=59.4433399602386, Blast_Score=650, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=503, Percent_Identity=51.6898608349901, Blast_Score=544, Evalue=1e-156,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 57292; Mature: 57292

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPAAEVVDLSRLQFALTALYHFLFVPLTLGLSVMLAIMETVYVMTGRDLWKKMVKYWGV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LFGINFVLGVATGLTMEFQFGTNWAYYSHYVGDVFGAPLAIEGLMAFFLEATFVGLFFFG
HHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
WNRLSKLQHLTSTWLLALGTNLSALWILIANGWMQHPVGAYFDYQTMRMEVSSFYEMLFN
HHHHHHHHHHHHHHHHHHCCCHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
PVAQAKFVHTISAGYVTGAMFVLSISAYFLLRGRNKAFAKRSMTVAVSFGLASALSVVVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHCEEEEEEHHHHHHEEEEEE
GDESGYVANENQKMKLATMEAMWHTEKAPANLTVFGIPDEKTLTTKYAIDIPYALGIIAT
ECCCCCEECCCCCEEHHHHHHHHCCCCCCCCEEEEECCCCCEEEEEEEEECCHHHHHHEE
RSFNTPLQGIIELIEEGKLKIKDGMIAYDALKVLQKDPKNEQAKAVFTKHSENLGYALLL
CCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHH
KKYTENVTDATEEQINQAAHDLKPKVLPMFFSFRIMVACGIYFILLFATGFYLSVRHRLE
HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTTWYHRIAFYSLPLPWVAAELGWIVAEYGRQPWVVEGILPTFMGASSLTSGQVMTSIAG
HHHHHHHHHEEECCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHCCCCCCCCCHHHHHHHH
FVLFYTVLAIVEIYLMVKYIRLGPDGMNHH
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MIPAAEVVDLSRLQFALTALYHFLFVPLTLGLSVMLAIMETVYVMTGRDLWKKMVKYWGV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LFGINFVLGVATGLTMEFQFGTNWAYYSHYVGDVFGAPLAIEGLMAFFLEATFVGLFFFG
HHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
WNRLSKLQHLTSTWLLALGTNLSALWILIANGWMQHPVGAYFDYQTMRMEVSSFYEMLFN
HHHHHHHHHHHHHHHHHHCCCHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
PVAQAKFVHTISAGYVTGAMFVLSISAYFLLRGRNKAFAKRSMTVAVSFGLASALSVVVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHCEEEEEEHHHHHHEEEEEE
GDESGYVANENQKMKLATMEAMWHTEKAPANLTVFGIPDEKTLTTKYAIDIPYALGIIAT
ECCCCCEECCCCCEEHHHHHHHHCCCCCCCCEEEEECCCCCEEEEEEEEECCHHHHHHEE
RSFNTPLQGIIELIEEGKLKIKDGMIAYDALKVLQKDPKNEQAKAVFTKHSENLGYALLL
CCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHH
KKYTENVTDATEEQINQAAHDLKPKVLPMFFSFRIMVACGIYFILLFATGFYLSVRHRLE
HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTTWYHRIAFYSLPLPWVAAELGWIVAEYGRQPWVVEGILPTFMGASSLTSGQVMTSIAG
HHHHHHHHHEEECCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHCCCCCCCCCHHHHHHHH
FVLFYTVLAIVEIYLMVKYIRLGPDGMNHH
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]