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The map label for this gene is ybbD [H]

Identifier: 54294135

GI number: 54294135

Start: 1342201

End: 1343349

Strand: Direct

Name: ybbD [H]

Synonym: lpl1199

Alternate gene names: 54294135

Gene position: 1342201-1343349 (Clockwise)

Preceding gene: 54294134

Following gene: 54294136

Centisome position: 40.12

GC content: 34.9

Gene sequence:

>1149_bases
ATGAGTTTAGCATTGAAAATCAAGTCAATTATTTTATCTTTTTTTCTTTGTTTGATGGCAACAGTAGCTTGTGCCACACA
AGTGGGTTTGAGAGATAAAATTGGGCAAATGTTAATATTAGGGTTCCAGGGCAAAGTGGTTGACGAGAAATCACCTATTG
CCCAGGCAATTGAGAAAAACAACATTGGTGGTGTTATTCTTTTTGATTTTAATCAGCAGTCACAAACTTTTAATAAAAAT
ATAGAAAATCCGGAACAAGTTAACCGGTTAAATAATCAGTTACAAACACTTACGCAAAAAGCCAATCGTAAATATCATAG
AGATAATTTACCATTACTTATTTCTGTCGATTACGAAGGTGGAAACGTCAATCGATTGCATCCCCGTTATGGATTCCCTG
AAATGCCTTCAGCAAAAGACATTGGCTCCATGTCTCTGGAAAGAGCTGATGCATCAGCAGAATTGATGGCAAATACTTTA
AAATCAACAGGATTTAATTTGAATTTTTTCCCTGAATTAGATGTGAATATAAACCCTGATAATCCTATCATAGGCAAAAA
AGACAGGAGTTTCTCTTCGATACCGGAAATTGTCACTCAATACGCGCAACTTTATACAGAGCAATTTATAACACATCAAA
TACATTGTTCTTATAAACATTTTCCTGGACATGGCAGTTCATTATCTGATTCACATTTGGGTTTTGTAGATATAACTGAC
ACCTGGAGCGAGCAAGAATTAATCCCTTTTTTACAATTATTATCTCAACCCAATCATTGCGATATGGTGATGATAGCTCA
TATTGTGAATAGAAAACTGGATATGACAGGGCTACCTGCCAGCCTTTCTTACCAGATCATTAACGGATTATTGCGTCGTG
ATTTAAAATTTGACGGGGTTGTTATCACCGATGATATGCAAATGAAAGCAATAACGAATTATTATGGATTAGAAACTGCT
GTTACTCTTTCGATTAATGCAGGAGCAGATATGCTAATATTTGGTAATCAATTGGTAGAAAAATTTCAAGACTCGACAGA
AATCATTGACATGATCGAGCAAAAAGTTCGATCGGGTGAGATTTCTGAACAAAGGATTAATGAAGCTTATCAACGAATTG
TAAAAATGAAGAGGTCTTTTAATTATTAG

Upstream 100 bases:

>100_bases
GGATGGTATTAGGTTAATTTTATTGTACAGTATTTGATTAATTTGGACTTGATATGTATAATTGGCGCATATCGCAATAG
AGAAAATTAAGCATTTTCTA

Downstream 100 bases:

>100_bases
AGATTTTTCTCGATTTACTCTGATAAAAGTAGCTGATAATCTGTGAGCCATAGATAAGCTGAGGCATATATGCGATGCAG
GTCAATTATCAAAAAACTAA

Product: hypothetical protein

Products: N-acetylglucosamin; anhydro-N-acetylmuramic acid [C]

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MSLALKIKSIILSFFLCLMATVACATQVGLRDKIGQMLILGFQGKVVDEKSPIAQAIEKNNIGGVILFDFNQQSQTFNKN
IENPEQVNRLNNQLQTLTQKANRKYHRDNLPLLISVDYEGGNVNRLHPRYGFPEMPSAKDIGSMSLERADASAELMANTL
KSTGFNLNFFPELDVNINPDNPIIGKKDRSFSSIPEIVTQYAQLYTEQFITHQIHCSYKHFPGHGSSLSDSHLGFVDITD
TWSEQELIPFLQLLSQPNHCDMVMIAHIVNRKLDMTGLPASLSYQIINGLLRRDLKFDGVVITDDMQMKAITNYYGLETA
VTLSINAGADMLIFGNQLVEKFQDSTEIIDMIEQKVRSGEISEQRINEAYQRIVKMKRSFNY

Sequences:

>Translated_382_residues
MSLALKIKSIILSFFLCLMATVACATQVGLRDKIGQMLILGFQGKVVDEKSPIAQAIEKNNIGGVILFDFNQQSQTFNKN
IENPEQVNRLNNQLQTLTQKANRKYHRDNLPLLISVDYEGGNVNRLHPRYGFPEMPSAKDIGSMSLERADASAELMANTL
KSTGFNLNFFPELDVNINPDNPIIGKKDRSFSSIPEIVTQYAQLYTEQFITHQIHCSYKHFPGHGSSLSDSHLGFVDITD
TWSEQELIPFLQLLSQPNHCDMVMIAHIVNRKLDMTGLPASLSYQIINGLLRRDLKFDGVVITDDMQMKAITNYYGLETA
VTLSINAGADMLIFGNQLVEKFQDSTEIIDMIEQKVRSGEISEQRINEAYQRIVKMKRSFNY
>Mature_381_residues
SLALKIKSIILSFFLCLMATVACATQVGLRDKIGQMLILGFQGKVVDEKSPIAQAIEKNNIGGVILFDFNQQSQTFNKNI
ENPEQVNRLNNQLQTLTQKANRKYHRDNLPLLISVDYEGGNVNRLHPRYGFPEMPSAKDIGSMSLERADASAELMANTLK
STGFNLNFFPELDVNINPDNPIIGKKDRSFSSIPEIVTQYAQLYTEQFITHQIHCSYKHFPGHGSSLSDSHLGFVDITDT
WSEQELIPFLQLLSQPNHCDMVMIAHIVNRKLDMTGLPASLSYQIINGLLRRDLKFDGVVITDDMQMKAITNYYGLETAV
TLSINAGADMLIFGNQLVEKFQDSTEIIDMIEQKVRSGEISEQRINEAYQRIVKMKRSFNY

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=284, Percent_Identity=28.5211267605634, Blast_Score=102, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: NA

Molecular weight: Translated: 43151; Mature: 43020

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLALKIKSIILSFFLCLMATVACATQVGLRDKIGQMLILGFQGKVVDEKSPIAQAIEKN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCEEEEECCCCCCCCCCHHHHHHHHC
NIGGVILFDFNQQSQTFNKNIENPEQVNRLNNQLQTLTQKANRKYHRDNLPLLISVDYEG
CCCEEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCC
GNVNRLHPRYGFPEMPSAKDIGSMSLERADASAELMANTLKSTGFNLNFFPELDVNINPD
CCCCEECCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCEEECCC
NPIIGKKDRSFSSIPEIVTQYAQLYTEQFITHQIHCSYKHFPGHGSSLSDSHLGFVDITD
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECEEECCCCCCCCCCCCCCEEEECC
TWSEQELIPFLQLLSQPNHCDMVMIAHIVNRKLDMTGLPASLSYQIINGLLRRDLKFDGV
CCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE
VITDDMQMKAITNYYGLETAVTLSINAGADMLIFGNQLVEKFQDSTEIIDMIEQKVRSGE
EEECCCHHHHHHHHHCCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCC
ISEQRINEAYQRIVKMKRSFNY
CHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SLALKIKSIILSFFLCLMATVACATQVGLRDKIGQMLILGFQGKVVDEKSPIAQAIEKN
CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCEEEEECCCCCCCCCCHHHHHHHHC
NIGGVILFDFNQQSQTFNKNIENPEQVNRLNNQLQTLTQKANRKYHRDNLPLLISVDYEG
CCCEEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCC
GNVNRLHPRYGFPEMPSAKDIGSMSLERADASAELMANTLKSTGFNLNFFPELDVNINPD
CCCCEECCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCEEECCC
NPIIGKKDRSFSSIPEIVTQYAQLYTEQFITHQIHCSYKHFPGHGSSLSDSHLGFVDITD
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECEEECCCCCCCCCCCCCCEEEECC
TWSEQELIPFLQLLSQPNHCDMVMIAHIVNRKLDMTGLPASLSYQIINGLLRRDLKFDGV
CCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE
VITDDMQMKAITNYYGLETAVTLSINAGADMLIFGNQLVEKFQDSTEIIDMIEQKVRSGE
EEECCCHHHHHHHHHCCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCC
ISEQRINEAYQRIVKMKRSFNY
CHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Cell Wall [C]

Specific reaction: Cell Wall = N-acetylglucosamin + anhydro-N-acetylmuramic acid [C]

General reaction: Hydrolyse [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]