| Definition | Legionella pneumophila str. Lens, complete genome. |
|---|---|
| Accession | NC_006369 |
| Length | 3,345,687 |
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The map label for this gene is chiD [H]
Identifier: 54294057
GI number: 54294057
Start: 1246108
End: 1248456
Strand: Direct
Name: chiD [H]
Synonym: lpl1121
Alternate gene names: 54294057
Gene position: 1246108-1248456 (Clockwise)
Preceding gene: 54294051
Following gene: 54294060
Centisome position: 37.25
GC content: 40.74
Gene sequence:
>2349_bases ATGCGATATTTATTATTACTGCCAGGTCTTTTAATTGCAATTGTGACAAGTGTCAATGCCAATACCTCTTTAAAACCCTC AATTGCCCAACCTACAGCCTGTGTAAACTCACTTTTTACAGCAATGGGAAATCAACACTGGAAATCAATCGTATTAAAGT TAACCAATAATTGCAATCAGGCAGTCGATTTTCAAAATTCAACTGTCTCCTTTCAAACAACAGCAGCTTTAAATACCTCT TTTTGGGGGGATTTTTCTCCTTTATCTTACCCGGATAATGCTTTAAATATTTCTTCTCAACCTCAATCTGGCGGAAACTA TCTAGCCACTTTAAACCTGCATTTTCCCAGCTATCCGGGTGCTAATAGCAAGTTACCTGTCGGAAGTTCTATTTCAATTA AATATGGGGCAGTCACTGATAGTCATATCGAGGGAACGGCTAATGTTTATTTAAGCACAACGGTTGAATCAGGAAGCATC CAATTAATCAATGCTGCTGCAAAACCAACAAATGTGTCACAAGGATATGCATTAGTTCATGTCACAATGAATGGTCAATC AGTCAGTGATGTGCAATTACCATGGGAAACTTCAAAGACTCTATCTGGGTTTGCTGCAGGTAATTATGCTATTTCTGCTG AAACGGTTACTGACAGTAATGGCAATCTTTATCTGGGACAGGCCAATCCCAGCATGGTGAATGTGATTGCAAACCAAACA ACGAGCTCGACTATTAATTATGCTCGGGTACAAGAGACAGGCAAGATCAAGATCCATGTGCAGAACCTCCCTGGCGAATT AAGCAGCTACAATGAAAATCCAACTGTTCTACTTACCCAGAGTCAATCAGGAAATTCACGCTCACAGCTTGCTGTTTGGG GGAACACAATAACTGTTGCCGAGTTGAAAGAGGGGAGTAGTTACCAATTCTCAACTCCTGCAATTCAATATAACGATTAC AATTGCTGGCCCACTTTCACACCATCTTCCTTAGTGGCAAGTGCTGCAAATATTCCAACTACCAATTTAACCTATCAGTG TGCCCAGATCGTGAAAGATAATGTGACAATTAATGTCAGTGGCGCTCCATCCTCCCTGGCTTCATTGAAAATTATTTTAA CTCCCAACGATGGTTCACAAACAGTAGAACAGACAATAGATTTGGCCAATGGTGTTGGTTCATCTGCCATTTCTTTAACT GACGGGGTGATTTATACACTTTCAAGTGAAAGTGTTCCCGGCTATACAGTACAATTTTCGCCTCAACCTTTAACAGCAAC AGAAAATGCAACAGTAAACATCACTTTATCTCCGGTAACCGCTGCAAAAGGGCGTATTATTGGTTACGTACCGGGATGGA AAACTCCACCTGCCGCTCAAGAGTTGGCTAGCGCGGGTTATACTCATGTCATGATTGCTTTCGGCGTATTTAGTACCAAT ACTCCGGGTGTTATTGTTCCTGCTTTTGAAACAATAACCAAAGAATATATTCAGTCTCTTCATCAAGCCGGGATTAAAGT TATTCTTTCTTTAGGTGGTGCGTTAACCAGTATTCCCAATACAACAGTAGATTTTCACCAGGTTTTAGTAGCTTCTTCTT CACCAGAGGCATTTAAACAAACATTTATCAACTCTTTAAAGGAGTTAATTTCTCAATATGGTTTTGATGGGTTTGATATA GATATTGAGCATGGTATTAACGCTAGCGGTTCCTTTTCTCAACCACAGGGTGACATTGCTGTCTTGGCAAGCATTATCAA TACGATGTACAGCCAAAATTCTTCTCTGCTAATTACTCTGACACCTCAAGTGGCTAATATTGCTGCAACAAGCGGTTTCG ACCAAACCTGGGGGAATTATGCCTCTTTAATTATGCAAACCCATCAGTCTTTAGCGTGGGTAGGTATCCAGCTTTACAAT ACAGGATGTGCTTTCGGAGTTGATCAAGTATGCTATGGTCCTACACCAACTGATACCCCTGATTTTTCAGTAGCTATGGC TACCGATTTATTGGAGAATTGGCCAGCAACGGTCAATGGACGTCCTACAGGATTTCAACCTTATATTAGCTATTTAAGAC CTTCCCAAATTGTCATTGGTTATCCCTCTCCAAATGCTAGTGGTGGCAGTGACGGTTCACCGGTTACTCCGACAACCACA ATCAAGCGGGCTATTCAGTGCCTTAAGACAGCGATTGCCGGTAATACCAGTTGTGGTGCTTATGTTCCGCCAAGAGCTTA TGGGAATATCGGTGGTGTATTTAACTGGGAAGTAACTTATGATAAGAACAATCAATTCAAATTTGCAAAAGAATTGAAAA ATTGTGCTATTAATGGTGTTTGTGAGTAA
Upstream 100 bases:
>100_bases GCTAATTGTAAAAAAACTGACAATTTTCATATAGCTTATTATTAAATAAGAAAAAATGATGATAGATTAGTTTTTTCCAA TCACAAATGAGGAGGGATTG
Downstream 100 bases:
>100_bases TCAGTTTGACGGGTCAGGCTCTTTGAGCCTGACGCTTAAATCTTGAAATATTGTTTATCATCTATTAACTGTTTGATCCA ATATATTTTAATTTTGTATA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 782; Mature: 782
Protein sequence:
>782_residues MRYLLLLPGLLIAIVTSVNANTSLKPSIAQPTACVNSLFTAMGNQHWKSIVLKLTNNCNQAVDFQNSTVSFQTTAALNTS FWGDFSPLSYPDNALNISSQPQSGGNYLATLNLHFPSYPGANSKLPVGSSISIKYGAVTDSHIEGTANVYLSTTVESGSI QLINAAAKPTNVSQGYALVHVTMNGQSVSDVQLPWETSKTLSGFAAGNYAISAETVTDSNGNLYLGQANPSMVNVIANQT TSSTINYARVQETGKIKIHVQNLPGELSSYNENPTVLLTQSQSGNSRSQLAVWGNTITVAELKEGSSYQFSTPAIQYNDY NCWPTFTPSSLVASAANIPTTNLTYQCAQIVKDNVTINVSGAPSSLASLKIILTPNDGSQTVEQTIDLANGVGSSAISLT DGVIYTLSSESVPGYTVQFSPQPLTATENATVNITLSPVTAAKGRIIGYVPGWKTPPAAQELASAGYTHVMIAFGVFSTN TPGVIVPAFETITKEYIQSLHQAGIKVILSLGGALTSIPNTTVDFHQVLVASSSPEAFKQTFINSLKELISQYGFDGFDI DIEHGINASGSFSQPQGDIAVLASIINTMYSQNSSLLITLTPQVANIAATSGFDQTWGNYASLIMQTHQSLAWVGIQLYN TGCAFGVDQVCYGPTPTDTPDFSVAMATDLLENWPATVNGRPTGFQPYISYLRPSQIVIGYPSPNASGGSDGSPVTPTTT IKRAIQCLKTAIAGNTSCGAYVPPRAYGNIGGVFNWEVTYDKNNQFKFAKELKNCAINGVCE
Sequences:
>Translated_782_residues MRYLLLLPGLLIAIVTSVNANTSLKPSIAQPTACVNSLFTAMGNQHWKSIVLKLTNNCNQAVDFQNSTVSFQTTAALNTS FWGDFSPLSYPDNALNISSQPQSGGNYLATLNLHFPSYPGANSKLPVGSSISIKYGAVTDSHIEGTANVYLSTTVESGSI QLINAAAKPTNVSQGYALVHVTMNGQSVSDVQLPWETSKTLSGFAAGNYAISAETVTDSNGNLYLGQANPSMVNVIANQT TSSTINYARVQETGKIKIHVQNLPGELSSYNENPTVLLTQSQSGNSRSQLAVWGNTITVAELKEGSSYQFSTPAIQYNDY NCWPTFTPSSLVASAANIPTTNLTYQCAQIVKDNVTINVSGAPSSLASLKIILTPNDGSQTVEQTIDLANGVGSSAISLT DGVIYTLSSESVPGYTVQFSPQPLTATENATVNITLSPVTAAKGRIIGYVPGWKTPPAAQELASAGYTHVMIAFGVFSTN TPGVIVPAFETITKEYIQSLHQAGIKVILSLGGALTSIPNTTVDFHQVLVASSSPEAFKQTFINSLKELISQYGFDGFDI DIEHGINASGSFSQPQGDIAVLASIINTMYSQNSSLLITLTPQVANIAATSGFDQTWGNYASLIMQTHQSLAWVGIQLYN TGCAFGVDQVCYGPTPTDTPDFSVAMATDLLENWPATVNGRPTGFQPYISYLRPSQIVIGYPSPNASGGSDGSPVTPTTT IKRAIQCLKTAIAGNTSCGAYVPPRAYGNIGGVFNWEVTYDKNNQFKFAKELKNCAINGVCE >Mature_782_residues MRYLLLLPGLLIAIVTSVNANTSLKPSIAQPTACVNSLFTAMGNQHWKSIVLKLTNNCNQAVDFQNSTVSFQTTAALNTS FWGDFSPLSYPDNALNISSQPQSGGNYLATLNLHFPSYPGANSKLPVGSSISIKYGAVTDSHIEGTANVYLSTTVESGSI QLINAAAKPTNVSQGYALVHVTMNGQSVSDVQLPWETSKTLSGFAAGNYAISAETVTDSNGNLYLGQANPSMVNVIANQT TSSTINYARVQETGKIKIHVQNLPGELSSYNENPTVLLTQSQSGNSRSQLAVWGNTITVAELKEGSSYQFSTPAIQYNDY NCWPTFTPSSLVASAANIPTTNLTYQCAQIVKDNVTINVSGAPSSLASLKIILTPNDGSQTVEQTIDLANGVGSSAISLT DGVIYTLSSESVPGYTVQFSPQPLTATENATVNITLSPVTAAKGRIIGYVPGWKTPPAAQELASAGYTHVMIAFGVFSTN TPGVIVPAFETITKEYIQSLHQAGIKVILSLGGALTSIPNTTVDFHQVLVASSSPEAFKQTFINSLKELISQYGFDGFDI DIEHGINASGSFSQPQGDIAVLASIINTMYSQNSSLLITLTPQVANIAATSGFDQTWGNYASLIMQTHQSLAWVGIQLYN TGCAFGVDQVCYGPTPTDTPDFSVAMATDLLENWPATVNGRPTGFQPYISYLRPSQIVIGYPSPNASGGSDGSPVTPTTT IKRAIQCLKTAIAGNTSCGAYVPPRAYGNIGGVFNWEVTYDKNNQFKFAKELKNCAINGVCE
Specific function: Unknown
COG id: COG3469
COG function: function code G; Chitinase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 fibronectin type-III domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003610 - InterPro: IPR008957 - InterPro: IPR003961 - InterPro: IPR001223 - InterPro: IPR001579 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR013783 - InterPro: IPR015520 [H]
Pfam domain/function: PF02839 CBM_5_12; PF00041 fn3; PF00704 Glyco_hydro_18 [H]
EC number: =3.2.1.14 [H]
Molecular weight: Translated: 82918; Mature: 82918
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: PS01095 CHITINASE_18
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRYLLLLPGLLIAIVTSVNANTSLKPSIAQPTACVNSLFTAMGNQHWKSIVLKLTNNCNQ CEEEEHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC AVDFQNSTVSFQTTAALNTSFWGDFSPLSYPDNALNISSQPQSGGNYLATLNLHFPSYPG EECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCC ANSKLPVGSSISIKYGAVTDSHIEGTANVYLSTTVESGSIQLINAAAKPTNVSQGYALVH CCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCEEEEE VTMNGQSVSDVQLPWETSKTLSGFAAGNYAISAETVTDSNGNLYLGQANPSMVNVIANQT EEECCCCCCEEECCCCCCCCCCCEECCCEEEEEEEEECCCCCEEEECCCCCEEEEEECCC TSSTINYARVQETGKIKIHVQNLPGELSSYNENPTVLLTQSQSGNSRSQLAVWGNTITVA CCCCEEEEEEECCCEEEEEEECCCCHHHCCCCCCEEEEEECCCCCCCCEEEEECCEEEEE ELKEGSSYQFSTPAIQYNDYNCWPTFTPSSLVASAANIPTTNLTYQCAQIVKDNVTINVS EECCCCCEEECCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCEEEEEC GAPSSLASLKIILTPNDGSQTVEQTIDLANGVGSSAISLTDGVIYTLSSESVPGYTVQFS CCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCEEEEEECCCCCCEEEEEC PQPLTATENATVNITLSPVTAAKGRIIGYVPGWKTPPAAQELASAGYTHVMIAFGVFSTN CCCCCCCCCCEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHCCCEEEEEEEEEECCC TPGVIVPAFETITKEYIQSLHQAGIKVILSLGGALTSIPNTTVDFHQVLVASSSPEAFKQ CCCEEECCHHHHHHHHHHHHHHHHHHEEHHHCCHHHCCCCCCCCEEEEEEECCCCHHHHH TFINSLKELISQYGFDGFDIDIEHGINASGSFSQPQGDIAVLASIINTMYSQNSSLLITL HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE TPQVANIAATSGFDQTWGNYASLIMQTHQSLAWVGIQLYNTGCAFGVDQVCYGPTPTDTP CCCHHEEEECCCCCHHHHHHHHHHHHHHHCEEEEEEEEEECCCCCCCCHHCCCCCCCCCC DFSVAMATDLLENWPATVNGRPTGFQPYISYLRPSQIVIGYPSPNASGGSDGSPVTPTTT CCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHH IKRAIQCLKTAIAGNTSCGAYVPPRAYGNIGGVFNWEVTYDKNNQFKFAKELKNCAINGV HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHCCCCCC CE CC >Mature Secondary Structure MRYLLLLPGLLIAIVTSVNANTSLKPSIAQPTACVNSLFTAMGNQHWKSIVLKLTNNCNQ CEEEEHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC AVDFQNSTVSFQTTAALNTSFWGDFSPLSYPDNALNISSQPQSGGNYLATLNLHFPSYPG EECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCC ANSKLPVGSSISIKYGAVTDSHIEGTANVYLSTTVESGSIQLINAAAKPTNVSQGYALVH CCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCEEEEE VTMNGQSVSDVQLPWETSKTLSGFAAGNYAISAETVTDSNGNLYLGQANPSMVNVIANQT EEECCCCCCEEECCCCCCCCCCCEECCCEEEEEEEEECCCCCEEEECCCCCEEEEEECCC TSSTINYARVQETGKIKIHVQNLPGELSSYNENPTVLLTQSQSGNSRSQLAVWGNTITVA CCCCEEEEEEECCCEEEEEEECCCCHHHCCCCCCEEEEEECCCCCCCCEEEEECCEEEEE ELKEGSSYQFSTPAIQYNDYNCWPTFTPSSLVASAANIPTTNLTYQCAQIVKDNVTINVS EECCCCCEEECCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCEEEEEC GAPSSLASLKIILTPNDGSQTVEQTIDLANGVGSSAISLTDGVIYTLSSESVPGYTVQFS CCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCEEEEEECCCCCCEEEEEC PQPLTATENATVNITLSPVTAAKGRIIGYVPGWKTPPAAQELASAGYTHVMIAFGVFSTN CCCCCCCCCCEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHCCCEEEEEEEEEECCC TPGVIVPAFETITKEYIQSLHQAGIKVILSLGGALTSIPNTTVDFHQVLVASSSPEAFKQ CCCEEECCHHHHHHHHHHHHHHHHHHEEHHHCCHHHCCCCCCCCEEEEEEECCCCHHHHH TFINSLKELISQYGFDGFDIDIEHGINASGSFSQPQGDIAVLASIINTMYSQNSSLLITL HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE TPQVANIAATSGFDQTWGNYASLIMQTHQSLAWVGIQLYNTGCAFGVDQVCYGPTPTDTP CCCHHEEEECCCCCHHHHHHHHHHHHHHHCEEEEEEEEEECCCCCCCCHHCCCCCCCCCC DFSVAMATDLLENWPATVNGRPTGFQPYISYLRPSQIVIGYPSPNASGGSDGSPVTPTTT CCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHH IKRAIQCLKTAIAGNTSCGAYVPPRAYGNIGGVFNWEVTYDKNNQFKFAKELKNCAINGV HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHCCCCCC CE CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1729234 [H]