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The map label for this gene is vapI [H]

Identifier: 54294032

GI number: 54294032

Start: 1219338

End: 1219661

Strand: Direct

Name: vapI [H]

Synonym: lpl1093

Alternate gene names: 54294032

Gene position: 1219338-1219661 (Clockwise)

Preceding gene: 54294031

Following gene: 54294033

Centisome position: 36.45

GC content: 33.64

Gene sequence:

>324_bases
ATGATGATGAAGTTACAAAATATCCATCCAGGTGAAATCTTATTAGAGGAATTTTTGCTACCAATGGGTATCAGCCAAAA
TAAGCTTGCTAATGATATTGGTGTTCCTCCAAGGCGTATTAATGAAATTGTTCATGGTAAGCGCTCTATCACAGCAGATA
CTGATTTAAGATTATCCCGTGCATTAGGAACGTCTGAAGGCTTTTGGTTGGGATTGCAAGCTGATTATGATTTAGAAGAA
AAGAAAGCTAGTATTAAAAGTAAGTTAGAAAAAATTAAGTCTTTGATTTCCTTTGAAGAGACTATTAGTAAATATGCTAG
TTAA

Upstream 100 bases:

>100_bases
GCAACATAGCATAAAGATAAACGATCAGTGGCGCATTTGTTTTGTTTGGCAAGATGGCATCGTAACTGAAGTTGAAATTG
TTGACTACCATTAGGAGTAT

Downstream 100 bases:

>100_bases
CAAATAAAAACTTGAATTCATTTAGAGCACTCAGCACGTTCAGGGTCAGGTCTTGCTTTTTGCCAACTTCTAGTCAGAAG
TCAAAAAGCAGAGCCTGCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MMMKLQNIHPGEILLEEFLLPMGISQNKLANDIGVPPRRINEIVHGKRSITADTDLRLSRALGTSEGFWLGLQADYDLEE
KKASIKSKLEKIKSLISFEETISKYAS

Sequences:

>Translated_107_residues
MMMKLQNIHPGEILLEEFLLPMGISQNKLANDIGVPPRRINEIVHGKRSITADTDLRLSRALGTSEGFWLGLQADYDLEE
KKASIKSKLEKIKSLISFEETISKYAS
>Mature_107_residues
MMMKLQNIHPGEILLEEFLLPMGISQNKLANDIGVPPRRINEIVHGKRSITADTDLRLSRALGTSEGFWLGLQADYDLEE
KKASIKSKLEKIKSLISFEETISKYAS

Specific function: Unknown

COG id: COG3093

COG function: function code R; Plasmid maintenance system antidote protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013430
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 12058; Mature: 12058

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMMKLQNIHPGEILLEEFLLPMGISQNKLANDIGVPPRRINEIVHGKRSITADTDLRLSR
CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHH
ALGTSEGFWLGLQADYDLEEKKASIKSKLEKIKSLISFEETISKYAS
HCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMMKLQNIHPGEILLEEFLLPMGISQNKLANDIGVPPRRINEIVHGKRSITADTDLRLSR
CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHH
ALGTSEGFWLGLQADYDLEEKKASIKSKLEKIKSLISFEETISKYAS
HCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8169216 [H]