Click here to switch to the map view.

The map label for this gene is 54293973

Identifier: 54293973

GI number: 54293973

Start: 1162528

End: 1162854

Strand: Reverse

Name: 54293973

Synonym: lpl1030

Alternate gene names: NA

Gene position: 1162854-1162528 (Counterclockwise)

Preceding gene: 54293974

Following gene: 54293972

Centisome position: 34.76

GC content: 40.37

Gene sequence:

>327_bases
ATGAAACGATTGCTTTGTTTGACCTTGATAATGATAAGCCTTCAATGCTCAGCAAATAACCCTGATTTAAATGAAACTTT
GGTGCGCATCATTAATCAGATTAACGCCATCATGCCTTTGCTTGATGAAGCGCAAACACAAGTAACACCTAATGCTCGTA
TCCAATTGCAAATAGAAGGATTTGAAGACCTCCAAGGCCAGCATCACTCCGGATTGAGAGAAGACTTGCTAAATATCCGC
AACGGCCTGATTGACTACATCAACCAGCCCATCATTGCCCCTCGAAAAATTAAACCATTAGAAATGGATTTTGTGAGGAA
ACCTTAA

Upstream 100 bases:

>100_bases
CATCACCCCTGCTTATGTTTTTGTTCCTATCAGTTTATTGATGGGGTTAATGGTAGCGATGACGGCCAGCCGTTTTAAGA
AGTATTTATAGGGAGAAACC

Downstream 100 bases:

>100_bases
TGAGTAAAGACGAAATAGCGAGAATGTTTGCTTCAACATTCAAACAAGCCAGCAACAACATCTCAGCCCAAGTCTTTTCC
AGCAGTATCCGTTTTATTGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 108; Mature: 108

Protein sequence:

>108_residues
MKRLLCLTLIMISLQCSANNPDLNETLVRIINQINAIMPLLDEAQTQVTPNARIQLQIEGFEDLQGQHHSGLREDLLNIR
NGLIDYINQPIIAPRKIKPLEMDFVRKP

Sequences:

>Translated_108_residues
MKRLLCLTLIMISLQCSANNPDLNETLVRIINQINAIMPLLDEAQTQVTPNARIQLQIEGFEDLQGQHHSGLREDLLNIR
NGLIDYINQPIIAPRKIKPLEMDFVRKP
>Mature_108_residues
MKRLLCLTLIMISLQCSANNPDLNETLVRIINQINAIMPLLDEAQTQVTPNARIQLQIEGFEDLQGQHHSGLREDLLNIR
NGLIDYINQPIIAPRKIKPLEMDFVRKP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12354; Mature: 12354

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLLCLTLIMISLQCSANNPDLNETLVRIINQINAIMPLLDEAQTQVTPNARIQLQIEG
CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
FEDLQGQHHSGLREDLLNIRNGLIDYINQPIIAPRKIKPLEMDFVRKP
CHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKRLLCLTLIMISLQCSANNPDLNETLVRIINQINAIMPLLDEAQTQVTPNARIQLQIEG
CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
FEDLQGQHHSGLREDLLNIRNGLIDYINQPIIAPRKIKPLEMDFVRKP
CHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA