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The map label for this gene is ssb1 [H]

Identifier: 54293953

GI number: 54293953

Start: 1143774

End: 1144196

Strand: Reverse

Name: ssb1 [H]

Synonym: lpl1010

Alternate gene names: 54293953

Gene position: 1144196-1143774 (Counterclockwise)

Preceding gene: 54293954

Following gene: 54293952

Centisome position: 34.2

GC content: 40.9

Gene sequence:

>423_bases
ATGACTGCATTTTTAAACCGTGTTCAATTAATCGGTAATTTAGGTGCTGATCCTAAAAGCATCGCCGGAAAAGACGGACA
ATCTTTTGTCACCACCACTTTGGCTACTAATGAGTCATTCAAACAGAATGATGAATGGCAAACCAGAGTGGAATGGCATC
AGTTGGTGCTTTTTGGAAAGCTGACTAAAGTCACTGAATATTTAAAGAAAGGTTCGCAAGTCTATCTCGAAGGTAAATTA
CGCTCCAATCAATGGACTGACAATGAAGGCAAAGCGCGTCAAGCCTTAAGCATTGTTGTTAGCCACATTCAGCTTCTCAA
TTCACCAAAATCAGCTGACGAATCCAGTAACAAAACCGCAGAAGAGCACATGGCTCAGATGCGTGAAATGTTGCAACAGG
ATTCAGAAGAAATTCCGTTTTAA

Upstream 100 bases:

>100_bases
ATTGAAGTAATAAAAGTCTTATCCGCATAACAGAAAACCACCTGCCTATGCGGATGTTTTTCTGTTATGCGGCTCAAATT
AAAAACAACAGGAGAATACA

Downstream 100 bases:

>100_bases
TCATACCCTAACACGGGAGCAAGCTCCCGTGTGGGATAGCTCCCTTAATACAAGGAGATAATCCCATGGACACCCCTTCA
ATCTACGTCGCCTGTTTAGC

Product: hypothetical protein

Products: NA

Alternate protein names: SSB 1; Helix-destabilizing protein 1 [H]

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MTAFLNRVQLIGNLGADPKSIAGKDGQSFVTTTLATNESFKQNDEWQTRVEWHQLVLFGKLTKVTEYLKKGSQVYLEGKL
RSNQWTDNEGKARQALSIVVSHIQLLNSPKSADESSNKTAEEHMAQMREMLQQDSEEIPF

Sequences:

>Translated_140_residues
MTAFLNRVQLIGNLGADPKSIAGKDGQSFVTTTLATNESFKQNDEWQTRVEWHQLVLFGKLTKVTEYLKKGSQVYLEGKL
RSNQWTDNEGKARQALSIVVSHIQLLNSPKSADESSNKTAEEHMAQMREMLQQDSEEIPF
>Mature_139_residues
TAFLNRVQLIGNLGADPKSIAGKDGQSFVTTTLATNESFKQNDEWQTRVEWHQLVLFGKLTKVTEYLKKGSQVYLEGKLR
SNQWTDNEGKARQALSIVVSHIQLLNSPKSADESSNKTAEEHMAQMREMLQQDSEEIPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Homo sapiens, GI4507231, Length=114, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1790494, Length=100, Percent_Identity=48, Blast_Score=95, Evalue=1e-21,
Organism=Drosophila melanogaster, GI85725234, Length=102, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24647376, Length=102, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=5e-12,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 15843; Mature: 15712

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAFLNRVQLIGNLGADPKSIAGKDGQSFVTTTLATNESFKQNDEWQTRVEWHQLVLFGK
CCHHHHHHHHHHCCCCCCHHHCCCCCCCEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
LTKVTEYLKKGSQVYLEGKLRSNQWTDNEGKARQALSIVVSHIQLLNSPKSADESSNKTA
HHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
EEHMAQMREMLQQDSEEIPF
HHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TAFLNRVQLIGNLGADPKSIAGKDGQSFVTTTLATNESFKQNDEWQTRVEWHQLVLFGK
CHHHHHHHHHHCCCCCCHHHCCCCCCCEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
LTKVTEYLKKGSQVYLEGKLRSNQWTDNEGKARQALSIVVSHIQLLNSPKSADESSNKTA
HHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
EEHMAQMREMLQQDSEEIPF
HHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10910347 [H]