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The map label for this gene is ccmF [H]

Identifier: 54293836

GI number: 54293836

Start: 1003901

End: 1005853

Strand: Direct

Name: ccmF [H]

Synonym: lpl0892

Alternate gene names: 54293836

Gene position: 1003901-1005853 (Clockwise)

Preceding gene: 54293835

Following gene: 54293837

Centisome position: 30.01

GC content: 41.94

Gene sequence:

>1953_bases
ATGATAGCGGAATTAGGGCTGTTTTTTTTGATTTTGGCTTTAGTGGCTTCTTTGATGTTAGCTTTGATCCCATTGGCGGG
TTTGCAATTCAATCGGAAAGACTGGATTGATTCCTCCAGGAATTATGTCGTACTGCAATTTTTATTTGTTGCATGTGCTT
ACCTATGTCTCACGGCCTGTTTTTTGATGGATGATTTTTCGGTGAACTATGTGCTGAATAACTCCAGCTTATTGCTCCCA
TGGTTTTATAAATTTTGTGCTGTGTGGGGTGGGCATGAAGGTTCCATGCTGTTATGGGTCGCTATCCTTAGTTTTTGGAT
GATCCTGGTTTGTTTTTTTAGCTCAAGCCTTGATACGGAAATGCGCGCTCGGGTATTAGTTATTTTAGGTTGGCTGAGCA
TTGGCTTTATTCTTTTTTTGTTAATGACTTCCAATCCTTTCTTGCGCCAATTTCAAGTATTGAATACACAGGGCCGTGAT
CTGAATCCATTGCTGCAAGATCCTGGCTTTTTATTCCATCCTCCTATGTTGTACATGGGATATGTAGGGTTTTGTGTCGC
TTTTGCTTTTGCTATTGCCGCCTTGTGGGCAGGGAAAGTAGAAACCAGTTGGTCTAAATGGACCAGACCCTGGACTCTGG
CTGCCTGGTGTTGTTTAACCGCGGGAATTACTTTAGGCAGTTGGTGGGCTTATAGAGAATTAGGTTGGGGTGGTTGGTGG
TTTTGGGATCCTGTAGAAAACGCTTCTTTTATGCCCTGGCTGGTTGGTACGGCACTATTGCATTCTTTGGCAGTTACAGA
GCAACGCCAGCAATTTAAAGCGTGGACCATGTTGCTTGCAATCGCTGCTTTTTCTTTAAGTTTAATCGGTACTTTTCTTG
TTCGCTCTGGAGTTTTAACTTCAGTCCATGCCTTTGCGGTTGATCCTCAGCGGGGATTATATATTCTGGGATTTTTGTTA
TTCGTCATTGGGGGTTCTTTAACATTGTTTCTTTTCAGAGCCCAAACCTTGCAAGTCAATAAACATCCTGGCTTATTATC
CCGAGAAAGTGCGTTGTTATTAAATAATGTGTTTTTAGTGGTTATTATGCTGACGGTATTAATGGGCACGGTTTATCCAT
TGCTGGTGGAAGGGTTAGGGTTAGGTAAATTATCCGTTGGAGCGCCCTATTTTAATGCGGTATTTGTCCCATTAATGATT
CCTTTATTGTTGCTAATGGGGTTAGGTGTCCGTTTGAAATGGCAGAATGATTGTTGGCGGGATGTCTTCAGAAAGCTAAA
TCGTATTTTTTTGCTTAGTCTGATATTGCCTGTCATTTTACTATTCTGTACCTCAACTGAAATACACCTTACAGCCCTTT
TGGGATTAATTTTGGCATTCTGGGTTTTGTTGAGTACTGTTAATGCGGCGTATCACAAAGTCAGGGATAGAGAGATGGCG
GGAGTTGGACAAGCTTATTGGGGGATGGTTTTGGCTCATTGTGGTGTTGCAGCAACAGTGATTGGCATTGCTGTTTCTTC
AGCTTATGGCGTACAAGATGATGTACGTATGTCTCCTGGCAAGCAAGTGAATCTGCTGGATTATCAGATTGGATTCATTA
ATCAAACTCCGTTGAATGGCCCAAATTACAAAGGGACAAGGGCTGAGTTTTCAATACAATATCAGAATAAAACTAGGCAA
ATTTTTCCTGAAAAAAGAGTGTATACCATTGGACAAATGCCAATGACTGAGTCTGCGATTGATGTGACTCCTTTTCGAGA
TATTTATATTGCTTTGGGGGAGCCACTGTCTGAGGATGCTTGGTCGGTACGTATTTATTATAAACCGTTGGTCCGCTGGA
TTTGGGCTGGCGGATTTATGATTTTAGCCGGAGGTGTTTTGGCATTAACAGATAGAAGGTATTACAGAAAAAGGCAAGTA
ACGGTAATGTCAGGGCGGGAGATCAAGATATGA

Upstream 100 bases:

>100_bases
CTGATAATCATCATTTTCATGCTACACAAGTTTTGGCAAAACACGATGCCAATTATATGCCACCTCAAGTAAAGTCTGCT
TTAGCTGATAAGGTGAAACA

Downstream 100 bases:

>100_bases
AAAAAATAGGATGGCGTGTTATTCCTATCGCTATTTTTTGTCTTTTATGTTTTTTCCTCTGGCGGGGTTTATCTTTGGAT
CCTCATCATTTGCCTTCAGC

Product: cytochrome C-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 650; Mature: 650

Protein sequence:

>650_residues
MIAELGLFFLILALVASLMLALIPLAGLQFNRKDWIDSSRNYVVLQFLFVACAYLCLTACFLMDDFSVNYVLNNSSLLLP
WFYKFCAVWGGHEGSMLLWVAILSFWMILVCFFSSSLDTEMRARVLVILGWLSIGFILFLLMTSNPFLRQFQVLNTQGRD
LNPLLQDPGFLFHPPMLYMGYVGFCVAFAFAIAALWAGKVETSWSKWTRPWTLAAWCCLTAGITLGSWWAYRELGWGGWW
FWDPVENASFMPWLVGTALLHSLAVTEQRQQFKAWTMLLAIAAFSLSLIGTFLVRSGVLTSVHAFAVDPQRGLYILGFLL
FVIGGSLTLFLFRAQTLQVNKHPGLLSRESALLLNNVFLVVIMLTVLMGTVYPLLVEGLGLGKLSVGAPYFNAVFVPLMI
PLLLLMGLGVRLKWQNDCWRDVFRKLNRIFLLSLILPVILLFCTSTEIHLTALLGLILAFWVLLSTVNAAYHKVRDREMA
GVGQAYWGMVLAHCGVAATVIGIAVSSAYGVQDDVRMSPGKQVNLLDYQIGFINQTPLNGPNYKGTRAEFSIQYQNKTRQ
IFPEKRVYTIGQMPMTESAIDVTPFRDIYIALGEPLSEDAWSVRIYYKPLVRWIWAGGFMILAGGVLALTDRRYYRKRQV
TVMSGREIKI

Sequences:

>Translated_650_residues
MIAELGLFFLILALVASLMLALIPLAGLQFNRKDWIDSSRNYVVLQFLFVACAYLCLTACFLMDDFSVNYVLNNSSLLLP
WFYKFCAVWGGHEGSMLLWVAILSFWMILVCFFSSSLDTEMRARVLVILGWLSIGFILFLLMTSNPFLRQFQVLNTQGRD
LNPLLQDPGFLFHPPMLYMGYVGFCVAFAFAIAALWAGKVETSWSKWTRPWTLAAWCCLTAGITLGSWWAYRELGWGGWW
FWDPVENASFMPWLVGTALLHSLAVTEQRQQFKAWTMLLAIAAFSLSLIGTFLVRSGVLTSVHAFAVDPQRGLYILGFLL
FVIGGSLTLFLFRAQTLQVNKHPGLLSRESALLLNNVFLVVIMLTVLMGTVYPLLVEGLGLGKLSVGAPYFNAVFVPLMI
PLLLLMGLGVRLKWQNDCWRDVFRKLNRIFLLSLILPVILLFCTSTEIHLTALLGLILAFWVLLSTVNAAYHKVRDREMA
GVGQAYWGMVLAHCGVAATVIGIAVSSAYGVQDDVRMSPGKQVNLLDYQIGFINQTPLNGPNYKGTRAEFSIQYQNKTRQ
IFPEKRVYTIGQMPMTESAIDVTPFRDIYIALGEPLSEDAWSVRIYYKPLVRWIWAGGFMILAGGVLALTDRRYYRKRQV
TVMSGREIKI
>Mature_650_residues
MIAELGLFFLILALVASLMLALIPLAGLQFNRKDWIDSSRNYVVLQFLFVACAYLCLTACFLMDDFSVNYVLNNSSLLLP
WFYKFCAVWGGHEGSMLLWVAILSFWMILVCFFSSSLDTEMRARVLVILGWLSIGFILFLLMTSNPFLRQFQVLNTQGRD
LNPLLQDPGFLFHPPMLYMGYVGFCVAFAFAIAALWAGKVETSWSKWTRPWTLAAWCCLTAGITLGSWWAYRELGWGGWW
FWDPVENASFMPWLVGTALLHSLAVTEQRQQFKAWTMLLAIAAFSLSLIGTFLVRSGVLTSVHAFAVDPQRGLYILGFLL
FVIGGSLTLFLFRAQTLQVNKHPGLLSRESALLLNNVFLVVIMLTVLMGTVYPLLVEGLGLGKLSVGAPYFNAVFVPLMI
PLLLLMGLGVRLKWQNDCWRDVFRKLNRIFLLSLILPVILLFCTSTEIHLTALLGLILAFWVLLSTVNAAYHKVRDREMA
GVGQAYWGMVLAHCGVAATVIGIAVSSAYGVQDDVRMSPGKQVNLLDYQIGFINQTPLNGPNYKGTRAEFSIQYQNKTRQ
IFPEKRVYTIGQMPMTESAIDVTPFRDIYIALGEPLSEDAWSVRIYYKPLVRWIWAGGFMILAGGVLALTDRRYYRKRQV
TVMSGREIKI

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=640, Percent_Identity=51.71875, Blast_Score=609, Evalue=1e-175,
Organism=Escherichia coli, GI1790511, Length=573, Percent_Identity=38.0453752181501, Blast_Score=337, Evalue=1e-93,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 73284; Mature: 73284

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAELGLFFLILALVASLMLALIPLAGLQFNRKDWIDSSRNYVVLQFLFVACAYLCLTAC
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHH
FLMDDFSVNYVLNNSSLLLPWFYKFCAVWGGHEGSMLLWVAILSFWMILVCFFSSSLDTE
HHHCCCCEEEEECCCCEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
MRARVLVILGWLSIGFILFLLMTSNPFLRQFQVLNTQGRDLNPLLQDPGFLFHPPMLYMG
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHCCCCCEECCHHHHHH
YVGFCVAFAFAIAALWAGKVETSWSKWTRPWTLAAWCCLTAGITLGSWWAYRELGWGGWW
HHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCEE
FWDPVENASFMPWLVGTALLHSLAVTEQRQQFKAWTMLLAIAAFSLSLIGTFLVRSGVLT
EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
SVHAFAVDPQRGLYILGFLLFVIGGSLTLFLFRAQTLQVNKHPGLLSRESALLLNNVFLV
HHHHEEECCCCCHHHHHHHHHHHCCHHHHHHEEHHHEEECCCCCCCCCCHHHHHHHHHHH
VIMLTVLMGTVYPLLVEGLGLGKLSVGAPYFNAVFVPLMIPLLLLMGLGVRLKWQNDCWR
HHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHH
DVFRKLNRIFLLSLILPVILLFCTSTEIHLTALLGLILAFWVLLSTVNAAYHKVRDREMA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVGQAYWGMVLAHCGVAATVIGIAVSSAYGVQDDVRMSPGKQVNLLDYQIGFINQTPLNG
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECEECCCCCC
PNYKGTRAEFSIQYQNKTRQIFPEKRVYTIGQMPMTESAIDVTPFRDIYIALGEPLSEDA
CCCCCCCEEEEEEECCCCHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHEEECCCCCCCC
WSVRIYYKPLVRWIWAGGFMILAGGVLALTDRRYYRKRQVTVMSGREIKI
EEEEEEHHHHHHHHHHCCHHHHHCCHHEEHHHHHHHHHCEEEECCCEECC
>Mature Secondary Structure
MIAELGLFFLILALVASLMLALIPLAGLQFNRKDWIDSSRNYVVLQFLFVACAYLCLTAC
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHH
FLMDDFSVNYVLNNSSLLLPWFYKFCAVWGGHEGSMLLWVAILSFWMILVCFFSSSLDTE
HHHCCCCEEEEECCCCEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
MRARVLVILGWLSIGFILFLLMTSNPFLRQFQVLNTQGRDLNPLLQDPGFLFHPPMLYMG
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHCCCCCEECCHHHHHH
YVGFCVAFAFAIAALWAGKVETSWSKWTRPWTLAAWCCLTAGITLGSWWAYRELGWGGWW
HHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCEE
FWDPVENASFMPWLVGTALLHSLAVTEQRQQFKAWTMLLAIAAFSLSLIGTFLVRSGVLT
EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
SVHAFAVDPQRGLYILGFLLFVIGGSLTLFLFRAQTLQVNKHPGLLSRESALLLNNVFLV
HHHHEEECCCCCHHHHHHHHHHHCCHHHHHHEEHHHEEECCCCCCCCCCHHHHHHHHHHH
VIMLTVLMGTVYPLLVEGLGLGKLSVGAPYFNAVFVPLMIPLLLLMGLGVRLKWQNDCWR
HHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHH
DVFRKLNRIFLLSLILPVILLFCTSTEIHLTALLGLILAFWVLLSTVNAAYHKVRDREMA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVGQAYWGMVLAHCGVAATVIGIAVSSAYGVQDDVRMSPGKQVNLLDYQIGFINQTPLNG
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECEECCCCCC
PNYKGTRAEFSIQYQNKTRQIFPEKRVYTIGQMPMTESAIDVTPFRDIYIALGEPLSEDA
CCCCCCCEEEEEEECCCCHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHEEECCCCCCCC
WSVRIYYKPLVRWIWAGGFMILAGGVLALTDRRYYRKRQVTVMSGREIKI
EEEEEEHHHHHHHHHHCCHHHHHCCHHEEHHHHHHHHHCEEEECCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503; 7635817 [H]