Click here to switch to the map view.

The map label for this gene is 54293829

Identifier: 54293829

GI number: 54293829

Start: 999489

End: 999770

Strand: Reverse

Name: 54293829

Synonym: lpl0885

Alternate gene names: NA

Gene position: 999770-999489 (Counterclockwise)

Preceding gene: 54293830

Following gene: 54293826

Centisome position: 29.88

GC content: 34.75

Gene sequence:

>282_bases
ATGAGTGATTTCAAATCGAAGTTACCAGATCTTAATGAATTAACATCAATGACCGCGAAATTATTTAAAGGGATTAAAAC
CAGTGTCAGTGAAATAATTCAGGACTATAAGCAAAAAAGAGCACAGCCTGTTAGTACCGAAGAGAAAAACACAGAAAATA
AGACAACGGAAAGCAAAGCCGAACCAAAAACAGAAAGCAAGCCTGCTGAAAACAAAACTGAATCAAAAGCAGAAAGCAAA
CCTGAATCAAATACAGAAGAAACACAGGAAAAAGAGAAATAA

Upstream 100 bases:

>100_bases
TAAGGAATTAATGAGCAAAAACTTTCAAAATCTGCCATTAACCAAAATTTGAATCTCGGTATATAATTAAAGAATAACAA
TTTTTTCTGAGGAGTAAGAC

Downstream 100 bases:

>100_bases
TCCTGTGCTAAAGAATAAGTAATATGAGGTGAGTTGTGTATCTATCGCTCCATTCTTTCTGGTCGAGTTAAGCCATATTT
ACGCATTTTTTCAACTAAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 93; Mature: 92

Protein sequence:

>93_residues
MSDFKSKLPDLNELTSMTAKLFKGIKTSVSEIIQDYKQKRAQPVSTEEKNTENKTTESKAEPKTESKPAENKTESKAESK
PESNTEETQEKEK

Sequences:

>Translated_93_residues
MSDFKSKLPDLNELTSMTAKLFKGIKTSVSEIIQDYKQKRAQPVSTEEKNTENKTTESKAEPKTESKPAENKTESKAESK
PESNTEETQEKEK
>Mature_92_residues
SDFKSKLPDLNELTSMTAKLFKGIKTSVSEIIQDYKQKRAQPVSTEEKNTENKTTESKAEPKTESKPAENKTESKAESKP
ESNTEETQEKEK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10526; Mature: 10394

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDFKSKLPDLNELTSMTAKLFKGIKTSVSEIIQDYKQKRAQPVSTEEKNTENKTTESKA
CCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHC
EPKTESKPAENKTESKAESKPESNTEETQEKEK
CCCCCCCCCCCHHHHHHHCCCCCCCHHHHHCCC
>Mature Secondary Structure 
SDFKSKLPDLNELTSMTAKLFKGIKTSVSEIIQDYKQKRAQPVSTEEKNTENKTTESKA
CCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHC
EPKTESKPAENKTESKAESKPESNTEETQEKEK
CCCCCCCCCCCHHHHHHHCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA