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The map label for this gene is aidB [H]

Identifier: 54293780

GI number: 54293780

Start: 948957

End: 950660

Strand: Reverse

Name: aidB [H]

Synonym: lpl0836

Alternate gene names: 54293780

Gene position: 950660-948957 (Counterclockwise)

Preceding gene: 54293781

Following gene: 54293778

Centisome position: 28.41

GC content: 39.91

Gene sequence:

>1704_bases
ATGAGCATAAAAAATGAATATGAAACAGCAAGAGACCATTTCAGGTTATGGGATAAACAACTCAAAGACAATATACTGCT
CGAAAAGTCTTGTTTAATGAACACTTACAAAACTCATTTTCCCGATGAGCCCGATTTTATTCAACAATTGAGTCAATTTT
CCAAAGCAGTAGCTGAAGAATTAGAACCAACCGTTATGGAAAATAACCTGGATGCCAACTTGCCTAAAATAGAACAATAC
AATGCAATTGGTCAGCGCGATGATCGGGTAATCCACCATCCTGCCTATGTTCGAGCCGGCGATATTATTTATGGATCCAA
TCTCATGCAATATTTGCTAAAGCCAGGGCAAATGAAAAAAACGTTGAGCCTGTTTCTGCTCTCATCGCATGCCGGGGAGG
CAGGACACAACTGCCCTATCGCCTGTTCTGCGGGAGTAATACGTGTTTTAAGTCGTTATTCCCAATTAGAGAAAACCTCA
TATTATCTCGATAAACTCACTCACCCTTCTTTCAGTTACAATTTTACTGGAGCCCAATTTTTAACTGAAATTCAAGGTGG
TTCTGACGTTGGCGCCAATGCGACCCGTGCCAATCTGGATGAGCAAAATCAATGGCGCATTTCAGGTGAAAAATGGTTTT
GCTCCAACGCTAATGCCGATTTAATTTTAATGACGGCTCGTTTCGACGAGGAAACTCCCGGAACCAAAGGGTTGGGTTTG
TTTTTAGTGCCCAGTCGCCTGGACGATGGCAGCCCTAATCACTATTACCTTCGTCGATTAAAACAAAAAATTGGTACCCG
CACCATGGCAACTGCAGAAATAGATTTTGAAGGGGCGCTAGCCTACCCTATGGGTGATGTGGCGGAAGGAATACATTTGG
TTATGGAAAATGTGTTGCATTTATCAAGGATATTCAATTCCTTCTCAGTCTTGGGTATGTCTCGTCGCGCTTATCAGATT
GCCTGCTATTATGCTAAAAACCGCCGAGCATTTAACCATCCTATTATTGAATATCCTCTGGTAAAAGAAAGTTTGGCTAA
AATAAAATCAGAAAATCTGGCTATGCTAGCCAGCGTGTTTCATATGGCTCGTTGTCAGGATGAATTGGATGCTCTCCCAG
AGCCTCAACAAACCAAATCACAACAACTCTTATTACGTACACTGGCGAATATCAACAAGTACTTCACAGCCAAACGTTCA
GTGGACAATATACATCATTGTCTCGATTTATTGGCAGGAAATGGCACCATAGAGAATTTTTCTTCATTACCAAGACTATT
AAGAGACTGTATCGTTTGTGAAAATTGGGAGGGGACGCATTTTACATTATGGATGCAAACCCTAAGAGATATGCATAAAT
TTGCAATTGATGAATTATTCATTGCCCATTTGCGGCAACTTCTGGAGCAAGTTCAGGATATCAATCCTCATAAAGCATTG
TTTTTCGAAAAGATAAATGAGTTAGATACAACAATAAAAACAATGAAATCAGCCAATCATGGGGGGCAAAGTCTGCATAT
AAAAACGATCATTGAACATATGGCCTCTCTACTTGCTGCTTTATGTCTGGCTATAGAGATACAACAAGGCCAGTCGCCAG
AAACAAAGCAAGCTGGATTAACTTTATTTATTAATGATCATATAGTAAGTTGCTCACTTAAACACGACGACTATATGAAA
ATACTAAATAAAATAATTGGATAG

Upstream 100 bases:

>100_bases
AATAACCGCTATTACAATTTATTGTAAAAATATTTAAGTACAACAAGAACTTAAAAAACTGTGATATCAATGCATCTATT
AATTACCAAAGGATGGGGTA

Downstream 100 bases:

>100_bases
CTCACTCTGCAAATGCATTAACCAGCGGGCCGGGAAAAATTACTCGTAGTGTCAAACCAAAAAAATAGATTTTAAGTTTA
ACAAATTGAATTATATATAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 567; Mature: 566

Protein sequence:

>567_residues
MSIKNEYETARDHFRLWDKQLKDNILLEKSCLMNTYKTHFPDEPDFIQQLSQFSKAVAEELEPTVMENNLDANLPKIEQY
NAIGQRDDRVIHHPAYVRAGDIIYGSNLMQYLLKPGQMKKTLSLFLLSSHAGEAGHNCPIACSAGVIRVLSRYSQLEKTS
YYLDKLTHPSFSYNFTGAQFLTEIQGGSDVGANATRANLDEQNQWRISGEKWFCSNANADLILMTARFDEETPGTKGLGL
FLVPSRLDDGSPNHYYLRRLKQKIGTRTMATAEIDFEGALAYPMGDVAEGIHLVMENVLHLSRIFNSFSVLGMSRRAYQI
ACYYAKNRRAFNHPIIEYPLVKESLAKIKSENLAMLASVFHMARCQDELDALPEPQQTKSQQLLLRTLANINKYFTAKRS
VDNIHHCLDLLAGNGTIENFSSLPRLLRDCIVCENWEGTHFTLWMQTLRDMHKFAIDELFIAHLRQLLEQVQDINPHKAL
FFEKINELDTTIKTMKSANHGGQSLHIKTIIEHMASLLAALCLAIEIQQGQSPETKQAGLTLFINDHIVSCSLKHDDYMK
ILNKIIG

Sequences:

>Translated_567_residues
MSIKNEYETARDHFRLWDKQLKDNILLEKSCLMNTYKTHFPDEPDFIQQLSQFSKAVAEELEPTVMENNLDANLPKIEQY
NAIGQRDDRVIHHPAYVRAGDIIYGSNLMQYLLKPGQMKKTLSLFLLSSHAGEAGHNCPIACSAGVIRVLSRYSQLEKTS
YYLDKLTHPSFSYNFTGAQFLTEIQGGSDVGANATRANLDEQNQWRISGEKWFCSNANADLILMTARFDEETPGTKGLGL
FLVPSRLDDGSPNHYYLRRLKQKIGTRTMATAEIDFEGALAYPMGDVAEGIHLVMENVLHLSRIFNSFSVLGMSRRAYQI
ACYYAKNRRAFNHPIIEYPLVKESLAKIKSENLAMLASVFHMARCQDELDALPEPQQTKSQQLLLRTLANINKYFTAKRS
VDNIHHCLDLLAGNGTIENFSSLPRLLRDCIVCENWEGTHFTLWMQTLRDMHKFAIDELFIAHLRQLLEQVQDINPHKAL
FFEKINELDTTIKTMKSANHGGQSLHIKTIIEHMASLLAALCLAIEIQQGQSPETKQAGLTLFINDHIVSCSLKHDDYMK
ILNKIIG
>Mature_566_residues
SIKNEYETARDHFRLWDKQLKDNILLEKSCLMNTYKTHFPDEPDFIQQLSQFSKAVAEELEPTVMENNLDANLPKIEQYN
AIGQRDDRVIHHPAYVRAGDIIYGSNLMQYLLKPGQMKKTLSLFLLSSHAGEAGHNCPIACSAGVIRVLSRYSQLEKTSY
YLDKLTHPSFSYNFTGAQFLTEIQGGSDVGANATRANLDEQNQWRISGEKWFCSNANADLILMTARFDEETPGTKGLGLF
LVPSRLDDGSPNHYYLRRLKQKIGTRTMATAEIDFEGALAYPMGDVAEGIHLVMENVLHLSRIFNSFSVLGMSRRAYQIA
CYYAKNRRAFNHPIIEYPLVKESLAKIKSENLAMLASVFHMARCQDELDALPEPQQTKSQQLLLRTLANINKYFTAKRSV
DNIHHCLDLLAGNGTIENFSSLPRLLRDCIVCENWEGTHFTLWMQTLRDMHKFAIDELFIAHLRQLLEQVQDINPHKALF
FEKINELDTTIKTMKSANHGGQSLHIKTIIEHMASLLAALCLAIEIQQGQSPETKQAGLTLFINDHIVSCSLKHDDYMKI
LNKIIG

Specific function: May help to prevent alkylation damage by protecting DNA and destroying alkylating agents [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Escherichia coli, GI87082384, Length=434, Percent_Identity=29.7235023041475, Blast_Score=160, Evalue=3e-40,
Organism=Caenorhabditis elegans, GI86563381, Length=418, Percent_Identity=30.3827751196172, Blast_Score=172, Evalue=5e-43,
Organism=Caenorhabditis elegans, GI86563383, Length=418, Percent_Identity=30.3827751196172, Blast_Score=172, Evalue=6e-43,
Organism=Caenorhabditis elegans, GI17538396, Length=300, Percent_Identity=26.6666666666667, Blast_Score=66, Evalue=6e-11,
Organism=Drosophila melanogaster, GI21356377, Length=263, Percent_Identity=25.4752851711027, Blast_Score=69, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M [H]

EC number: NA

Molecular weight: Translated: 64431; Mature: 64299

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKNEYETARDHFRLWDKQLKDNILLEKSCLMNTYKTHFPDEPDFIQQLSQFSKAVAEE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LEPTVMENNLDANLPKIEQYNAIGQRDDRVIHHPAYVRAGDIIYGSNLMQYLLKPGQMKK
CCCHHHCCCCCCCCCCHHHHHCCCCCCCCEEECCCEEEECCEEECHHHHHHHHCCCHHHH
TLSLFLLSSHAGEAGHNCPIACSAGVIRVLSRYSQLEKTSYYLDKLTHPSFSYNFTGAQF
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
LTEIQGGSDVGANATRANLDEQNQWRISGEKWFCSNANADLILMTARFDEETPGTKGLGL
HHHHCCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCCEEEEEEECCCCCCCCCCCEE
FLVPSRLDDGSPNHYYLRRLKQKIGTRTMATAEIDFEGALAYPMGDVAEGIHLVMENVLH
EEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
LSRIFNSFSVLGMSRRAYQIACYYAKNRRAFNHPIIEYPLVKESLAKIKSENLAMLASVF
HHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHH
HMARCQDELDALPEPQQTKSQQLLLRTLANINKYFTAKRSVDNIHHCLDLLAGNGTIENF
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
SSLPRLLRDCIVCENWEGTHFTLWMQTLRDMHKFAIDELFIAHLRQLLEQVQDINPHKAL
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
FFEKINELDTTIKTMKSANHGGQSLHIKTIIEHMASLLAALCLAIEIQQGQSPETKQAGL
HHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCE
TLFINDHIVSCSLKHDDYMKILNKIIG
EEEEECEEEEEECCCHHHHHHHHHHCC
>Mature Secondary Structure 
SIKNEYETARDHFRLWDKQLKDNILLEKSCLMNTYKTHFPDEPDFIQQLSQFSKAVAEE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LEPTVMENNLDANLPKIEQYNAIGQRDDRVIHHPAYVRAGDIIYGSNLMQYLLKPGQMKK
CCCHHHCCCCCCCCCCHHHHHCCCCCCCCEEECCCEEEECCEEECHHHHHHHHCCCHHHH
TLSLFLLSSHAGEAGHNCPIACSAGVIRVLSRYSQLEKTSYYLDKLTHPSFSYNFTGAQF
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
LTEIQGGSDVGANATRANLDEQNQWRISGEKWFCSNANADLILMTARFDEETPGTKGLGL
HHHHCCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCCEEEEEEECCCCCCCCCCCEE
FLVPSRLDDGSPNHYYLRRLKQKIGTRTMATAEIDFEGALAYPMGDVAEGIHLVMENVLH
EEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
LSRIFNSFSVLGMSRRAYQIACYYAKNRRAFNHPIIEYPLVKESLAKIKSENLAMLASVF
HHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHH
HMARCQDELDALPEPQQTKSQQLLLRTLANINKYFTAKRSVDNIHHCLDLLAGNGTIENF
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
SSLPRLLRDCIVCENWEGTHFTLWMQTLRDMHKFAIDELFIAHLRQLLEQVQDINPHKAL
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
FFEKINELDTTIKTMKSANHGGQSLHIKTIIEHMASLLAALCLAIEIQQGQSPETKQAGL
HHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCE
TLFINDHIVSCSLKHDDYMKILNKIIG
EEEEECEEEEEECCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961409; 7610040; 9278503 [H]