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The map label for this gene is rbn [C]

Identifier: 54293627

GI number: 54293627

Start: 737329

End: 738567

Strand: Reverse

Name: rbn [C]

Synonym: lpl0680

Alternate gene names: 54293627

Gene position: 738567-737329 (Counterclockwise)

Preceding gene: 54293637

Following gene: 54293618

Centisome position: 22.08

GC content: 40.68

Gene sequence:

>1239_bases
ATGAATTGGAAAGAAAAAGTAAAAACTAAATTCTACTCCTGCGATCGCTTTGTTCGGTTTGTTATACAACATTTCATACA
AGACGATTGTACCTACATTGCTTCGGCATTGGCGTTTACAAGCCTTCTGGCGGTTGTGCCATTGATGTCAGTGGGTTTGG
CAATATTTTCTTCATTTCCAGTATTCCAGGGTTTGGCGGAGCCGGTACAGAATTTTATTTTTGACAATTTTGTTCCGGCT
ACAGGTAAAATTGTGCAAAGCTATTTGCAACAGTTTACCTCTCAAGTATCAAAACTCTCAATTTGGGGTATAGTCTTTCT
AATTTTTACTGCGTTATTGGTCATGTTCACTATTGAACGAGCAATGAATAAAATCTGGAGAGTGAGTTCATCCCGACAAG
GTGTTTCTGCCTTTTTACTCTATTGGGCTATCATTTCTCTTGCCCCGGTTTTATTAGGTTTGAGCCTGGCAGCAAGCTCC
TATTTATTCTCCATGCCAATATTGGCAGATCATCGAGCTCCTTACACTATTCTTCACTATTCCCCATTTTTTCTTTCATT
GATTGGCTTTACCTTTTTGTATGTGGTGGTTCCCAATTGTCCTGTCAAAATCCGCCATGCTTTTTGGGGTGGCTTGGTTG
CTGCCATCTTGTTTGAATCAGCAAAGCATGCATTTGCATATTACCTGATACGCTACAATACCTATGCGTTGTTGTATGGG
GCATTTGCCACAGTACCTATATTTTTCATTTGGGTTTATTGGGTATGGATTATTACTTTGTTGGGCGCTGAAATCAGTTA
TGCCTTTTCAGTGCATCATCAGCGTCGTGGAGGGAAGTCCCTCGATGGCTTTTCACATGCGTTGCTCTGGCTGCACCAGT
TATGGTTAGCGCAACAGCATGGAAAGGGATTAAGCTTTAATGATCTGGTGGATGCCAGCAAACAACCTTTTGCTGTGGAT
GTGGATGAAATGATCAATGCTCTGATTTATCATGAACTGATCCATGCTACCGCTGATGGGCATTACATGTTAAGCCGTGA
TCTCAGTCACGTTACTCTTTATGATTTGACTCAATTGTTACCCTATCGCTTGCCAACTCATCTGGAGCTGCAATATTCCA
AAGCCTCTCTGGCGGAACAATGGAGAGCCGCCTTTAAAAGACATAATGAAGAATTGAAAAAATCTCTGGATATTAATTTG
GAAGAATTATTCAAGAAAACAGGAACAGTACTTAAATAA

Upstream 100 bases:

>100_bases
AACTTTTTTAATAATGAATTTGGTATTTGCATAAGTCCTGACTATACAAAAACGGGCATAAAACGATATAGTTATACAAT
AAAAATCTTGTATTTAATCC

Downstream 100 bases:

>100_bases
CCACATGTAATGATTTCAGGTTTATTCCGGGGTCAAGATAACCCCTGCAATCGAATGGATAACAAGAATAAAGTCTCTAA
AACCTGAATGATATTGTCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MNWKEKVKTKFYSCDRFVRFVIQHFIQDDCTYIASALAFTSLLAVVPLMSVGLAIFSSFPVFQGLAEPVQNFIFDNFVPA
TGKIVQSYLQQFTSQVSKLSIWGIVFLIFTALLVMFTIERAMNKIWRVSSSRQGVSAFLLYWAIISLAPVLLGLSLAASS
YLFSMPILADHRAPYTILHYSPFFLSLIGFTFLYVVVPNCPVKIRHAFWGGLVAAILFESAKHAFAYYLIRYNTYALLYG
AFATVPIFFIWVYWVWIITLLGAEISYAFSVHHQRRGGKSLDGFSHALLWLHQLWLAQQHGKGLSFNDLVDASKQPFAVD
VDEMINALIYHELIHATADGHYMLSRDLSHVTLYDLTQLLPYRLPTHLELQYSKASLAEQWRAAFKRHNEELKKSLDINL
EELFKKTGTVLK

Sequences:

>Translated_412_residues
MNWKEKVKTKFYSCDRFVRFVIQHFIQDDCTYIASALAFTSLLAVVPLMSVGLAIFSSFPVFQGLAEPVQNFIFDNFVPA
TGKIVQSYLQQFTSQVSKLSIWGIVFLIFTALLVMFTIERAMNKIWRVSSSRQGVSAFLLYWAIISLAPVLLGLSLAASS
YLFSMPILADHRAPYTILHYSPFFLSLIGFTFLYVVVPNCPVKIRHAFWGGLVAAILFESAKHAFAYYLIRYNTYALLYG
AFATVPIFFIWVYWVWIITLLGAEISYAFSVHHQRRGGKSLDGFSHALLWLHQLWLAQQHGKGLSFNDLVDASKQPFAVD
VDEMINALIYHELIHATADGHYMLSRDLSHVTLYDLTQLLPYRLPTHLELQYSKASLAEQWRAAFKRHNEELKKSLDINL
EELFKKTGTVLK
>Mature_412_residues
MNWKEKVKTKFYSCDRFVRFVIQHFIQDDCTYIASALAFTSLLAVVPLMSVGLAIFSSFPVFQGLAEPVQNFIFDNFVPA
TGKIVQSYLQQFTSQVSKLSIWGIVFLIFTALLVMFTIERAMNKIWRVSSSRQGVSAFLLYWAIISLAPVLLGLSLAASS
YLFSMPILADHRAPYTILHYSPFFLSLIGFTFLYVVVPNCPVKIRHAFWGGLVAAILFESAKHAFAYYLIRYNTYALLYG
AFATVPIFFIWVYWVWIITLLGAEISYAFSVHHQRRGGKSLDGFSHALLWLHQLWLAQQHGKGLSFNDLVDASKQPFAVD
VDEMINALIYHELIHATADGHYMLSRDLSHVTLYDLTQLLPYRLPTHLELQYSKASLAEQWRAAFKRHNEELKKSLDINL
EELFKKTGTVLK

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=274, Percent_Identity=39.7810218978102, Blast_Score=215, Evalue=4e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 47101; Mature: 47101

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
>Mature Secondary Structure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HHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA