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The map label for this gene is yrdA [H]

Identifier: 54293561

GI number: 54293561

Start: 666549

End: 667082

Strand: Reverse

Name: yrdA [H]

Synonym: lpl0613

Alternate gene names: 54293561

Gene position: 667082-666549 (Counterclockwise)

Preceding gene: 54293562

Following gene: 54293558

Centisome position: 19.94

GC content: 40.45

Gene sequence:

>534_bases
ATGAACTATTCCATTCGTAAATTTGAAGACAAGTATCCTGAATTAGGTGAACGAGTTTATATTGATCCGCAATCCACTGT
CATTGGTAACGTAACCCTGGGAGATGACGTATCCGTATGGCCTATGGCTGTTATCCGTGGTGATGTTAATTACATTCAAA
TAGGCCATTCATGCAGTATTCAAGATGGTGCTGTGTTGCATGTTACTCATGATGGTCCTTATACTCCAGGCGGTAGGCCA
TTAATTTTAGGGCAAGGAATCACGGTAGGGCACAAAGCTCTATTACACGCCTGCACTATCAATGATTACTGCTTAATTGG
CATGGGATCTATAATTTTAGACTCAGCGCACATACAAAAACATGTCATGATTGCTGCAGGAAGCATCGTACCTCCGGGAA
AAATACTCAAAAGCGGATATTTGTATTTGGGCAGCCCAGTTCAAGCCGTCAGAAAATTAACTGCAAAAGAGATAGAGCAA
ATTGAATATTCTGCCGGGCATTATATAAGATTAAAGGATAGATACCTTACATAA

Upstream 100 bases:

>100_bases
GGTTGCTATAAAAATGGGCGCATGTAAAAAGGACTTCGATAATACAATTGCAATTCATCCAACCAGCGCTGAAGAATTTG
TAACTATGGTGTAAATATAC

Downstream 100 bases:

>100_bases
TGTGATGCAGATAAGGTGTCTGCTGTTTTTCCAATTCCGTCACTTCTCCTGTAGGTACTCTTTTAAACTGTCCAAATGTT
GTTATAGATGGTGTTACTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MNYSIRKFEDKYPELGERVYIDPQSTVIGNVTLGDDVSVWPMAVIRGDVNYIQIGHSCSIQDGAVLHVTHDGPYTPGGRP
LILGQGITVGHKALLHACTINDYCLIGMGSIILDSAHIQKHVMIAAGSIVPPGKILKSGYLYLGSPVQAVRKLTAKEIEQ
IEYSAGHYIRLKDRYLT

Sequences:

>Translated_177_residues
MNYSIRKFEDKYPELGERVYIDPQSTVIGNVTLGDDVSVWPMAVIRGDVNYIQIGHSCSIQDGAVLHVTHDGPYTPGGRP
LILGQGITVGHKALLHACTINDYCLIGMGSIILDSAHIQKHVMIAAGSIVPPGKILKSGYLYLGSPVQAVRKLTAKEIEQ
IEYSAGHYIRLKDRYLT
>Mature_177_residues
MNYSIRKFEDKYPELGERVYIDPQSTVIGNVTLGDDVSVWPMAVIRGDVNYIQIGHSCSIQDGAVLHVTHDGPYTPGGRP
LILGQGITVGHKALLHACTINDYCLIGMGSIILDSAHIQKHVMIAAGSIVPPGKILKSGYLYLGSPVQAVRKLTAKEIEQ
IEYSAGHYIRLKDRYLT

Specific function: Unknown

COG id: COG0663

COG function: function code R; Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gamma-class carbonic anhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082240, Length=176, Percent_Identity=53.9772727272727, Blast_Score=206, Evalue=9e-55,
Organism=Escherichia coli, GI1787667, Length=146, Percent_Identity=31.5068493150685, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI87081681, Length=167, Percent_Identity=31.1377245508982, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19388; Mature: 19388

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYSIRKFEDKYPELGERVYIDPQSTVIGNVTLGDDVSVWPMAVIRGDVNYIQIGHSCSI
CCCCCCHHCCCCCCCCCEEEECCCCEEEEEEEECCCCCCCEEEEEECCCCEEEECCCCCC
QDGAVLHVTHDGPYTPGGRPLILGQGITVGHKALLHACTINDYCLIGMGSIILDSAHIQK
CCCEEEEEECCCCCCCCCCEEEEECCCCHHHHHHEEEECCCCEEEEECCHHHEECHHHHE
HVMIAAGSIVPPGKILKSGYLYLGSPVQAVRKLTAKEIEQIEYSAGHYIRLKDRYLT
EEEEEECCCCCCHHHHHCCCEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
>Mature Secondary Structure
MNYSIRKFEDKYPELGERVYIDPQSTVIGNVTLGDDVSVWPMAVIRGDVNYIQIGHSCSI
CCCCCCHHCCCCCCCCCEEEECCCCEEEEEEEECCCCCCCEEEEEECCCCEEEECCCCCC
QDGAVLHVTHDGPYTPGGRPLILGQGITVGHKALLHACTINDYCLIGMGSIILDSAHIQK
CCCEEEEEECCCCCCCCCCEEEEECCCCHHHHHHEEEECCCCEEEEECCHHHEECHHHHE
HVMIAAGSIVPPGKILKSGYLYLGSPVQAVRKLTAKEIEQIEYSAGHYIRLKDRYLT
EEEEEECCCCCCHHHHHCCCEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]