Click here to switch to the map view.

The map label for this gene is yhbH [C]

Identifier: 54293468

GI number: 54293468

Start: 564540

End: 564839

Strand: Reverse

Name: yhbH [C]

Synonym: lpl0517

Alternate gene names: 54293468

Gene position: 564839-564540 (Counterclockwise)

Preceding gene: 54293469

Following gene: 54293467

Centisome position: 16.88

GC content: 36.67

Gene sequence:

>300_bases
ATGCAAATCAACATTACTGGACATGGTATGGATGTCACTCCTGCACTAAGAGCATTCACTGAAGAAAAATTTGATAAGCT
TGAGCGTCATTTTGATCACATCAGAGCAATTAATGTAGTATTTGATGTCGAAAAAGTAAGACAAATAGCAGAAGCGACCG
TATTGGTTACCAAAGGCGAGTTGCATGCCAGTTCAGAATCAGAAGACATGTATGCTGCTATTGATACTTTGGTAGACAAA
TTAAATCGACAACTGATTAAACATAAAGAAAAACTTTTAGCCCATAGAGACAGGGATTAA

Upstream 100 bases:

>100_bases
GACGTACTGTTGCCAAATATCGCGAAGCAATGGGGATTCCCCCATCCAATGAAAGAAAGGTTATTAGTAGTTAATTAATC
GGTCAACGAAAGGAGGTTTT

Downstream 100 bases:

>100_bases
ATGTTATTTTAAATACAAACTCTTTTACTTTAATTTAATATCAACACCTTCTCAGTGCTTATGTAAACTGACATAAAACA
AATAACCGTTTTTTAGATGA

Product: hypothetical protein

Products: NA

Alternate protein names: ORF95 [H]

Number of amino acids: Translated: 99; Mature: 99

Protein sequence:

>99_residues
MQINITGHGMDVTPALRAFTEEKFDKLERHFDHIRAINVVFDVEKVRQIAEATVLVTKGELHASSESEDMYAAIDTLVDK
LNRQLIKHKEKLLAHRDRD

Sequences:

>Translated_99_residues
MQINITGHGMDVTPALRAFTEEKFDKLERHFDHIRAINVVFDVEKVRQIAEATVLVTKGELHASSESEDMYAAIDTLVDK
LNRQLIKHKEKLLAHRDRD
>Mature_99_residues
MQINITGHGMDVTPALRAFTEEKFDKLERHFDHIRAINVVFDVEKVRQIAEATVLVTKGELHASSESEDMYAAIDTLVDK
LNRQLIKHKEKLLAHRDRD

Specific function: Probably modulates the activity of sigma(54) (rpoN) [H]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

Organism=Escherichia coli, GI1789595, Length=95, Percent_Identity=56.8421052631579, Blast_Score=110, Evalue=1e-26,
Organism=Escherichia coli, GI1788949, Length=96, Percent_Identity=38.5416666666667, Blast_Score=66, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 11409; Mature: 11409

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQINITGHGMDVTPALRAFTEEKFDKLERHFDHIRAINVVFDVEKVRQIAEATVLVTKGE
CEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCC
LHASSESEDMYAAIDTLVDKLNRQLIKHKEKLLAHRDRD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQINITGHGMDVTPALRAFTEEKFDKLERHFDHIRAINVVFDVEKVRQIAEATVLVTKGE
CEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCC
LHASSESEDMYAAIDTLVDKLNRQLIKHKEKLLAHRDRD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2695747; 2999700 [H]