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The map label for this gene is 54293255

Identifier: 54293255

GI number: 54293255

Start: 345834

End: 346988

Strand: Reverse

Name: 54293255

Synonym: lpl0303

Alternate gene names: NA

Gene position: 346988-345834 (Counterclockwise)

Preceding gene: 54293256

Following gene: 54293251

Centisome position: 10.37

GC content: 39.13

Gene sequence:

>1155_bases
ATGATGTTTGGTTTTTTAAATATGACTTTATGGGGATATCTTTTGACCGGTTTTGTCCTGACTCACATCACCACTACTGC
TGTTACCATTTACCTGCATCGCTACCAGACACACCGCGCATTAACTCTGCATCCTCTTGTCAGCCATTTTTTCCGTTTCT
GGCTTTGGTTAACGACAGGGATGACCACAGCAGAATGGGTAGCCATTCATAGGAAACATCATGCCAATACTGACATGGAA
GGGGATCCGCATAGCCCTCAGGTATTTAATATAAGAAAAGTATTTTGGCAGGTTCCAGAGTTATATCGAGAAGCATCTAA
AGATAAAGACATGATTAAAAAGTACTCCTATGGTACCCCCAACGACTGGATAGAGCGCAAATTATACTCTCCCCATGCGA
ACAAAGGCATATTTTTAATGCTCGCACTTAATCTTTTCTTGTTTGGAATTCCTGGACTTACCCTTTGGGCAATCCAAATG
ATGTGGATACCTCTTGTTGCTGGCGTGGTCAATGGAATAGGGCATTATTGGGGTTATCGCAATCATGAATCGTCAGATTC
TTCAACCAATGTTTTTCCCTGGGGTTTATTGATTGCTGGTGAAGAATTGCATAATAATCATCATACCTTCGCCTCCTCAG
CCAAATTTTCCATTAAATGGTGGGAATTTGATTTGGGTTGGTTTTACATACGTTGTTTGTCTTTTTTAAAGCTTGCCAAA
GTAAAAAAATTACCCCCAAAACTGATCATTGACAAGAATAAATCTCATATAGATGTAGATTCGGTAAAAGCTATACTTGG
CAATCGCTTTCAAGTGATATCTGATTATTACAAGCTGGTTATATTTCCTACTCTGCGCGATATGCAATACCGCATAAAAA
ATCGGGATTTAAAGAATGCTCGCCATTTACTTAAGAAACCGAATGAACAGCTATCCCATGCTGATCAGTTGCGATTGAAA
ACATTACTTAAGCAACATGACAACTTGCAAGCGGTTCATAATTACCGCGAATTATTACAGCAGATATGGTTAAAAACGTC
CCTATCCAATAAGGATCTTCTTAATTTAATACAAAAATGGTGTAGCCAGGCCGAAGAATCCGGACTGCTTGTGTTAAGGC
AATTTGCATCACAATTAAAAAGCTATTCTCTCTGA

Upstream 100 bases:

>100_bases
GCCGCTAAGATAAAAATAAATAGTATATACTTAGTGGATATAAAGATATTCTTACATTTTGTTTTGCCAATTACATAATT
TTAGGCACCTAAGAGGAGGA

Downstream 100 bases:

>100_bases
AGTTTTGCAAATGCTTTTATTCCTTACCATGACAGTGAGATTAGTCATGGTATCAGGATTAAATTTATATTATCGTACAA
TAAAGACTAATCAAACAGCT

Product: hypothetical protein

Products: NA

Alternate protein names: Stearoyl-CoA 9-Desaturase; Delta-9 Acyl-Phospholipid Desaturase; Fatty-Acid Desaturase; Delta-9 Desaturase; Fatty Acid Desaturase Family Protein; Fatty Acid Desaturase Subfamily; Stearoyl-CoA Desaturase; Delta 9 Acyl-Lipid Fatty Acid Desaturase; Palmitoyl-Monogalactosyldiacylglycerol Delta-7 Desaturase; Delta-9 Acyl-Lipid Desaturase; Acyl-CoA Desaturase; Fatty Acid Desaturase Family Proteiin; Stearoyl-CoA Desaturase Oxidoreductase; Fatty-Acid Desaturase Transmenbrane Protein; Delta-9 Fatty Ac Id Desaturase; Transmembrane Fatty Acid Desaturase; Syn-2 Delta 9 Acyl-Lipid Fatty Acid Desaturase; Desaturase-Like; Stearoyl-CoA-9-Desaturase; Delta 9 Acyl-Lipid Desaturase; Stearoyl-CoA Desaturase Oxidoreductase Protein; Fatty Acid Desaturase Family

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MMFGFLNMTLWGYLLTGFVLTHITTTAVTIYLHRYQTHRALTLHPLVSHFFRFWLWLTTGMTTAEWVAIHRKHHANTDME
GDPHSPQVFNIRKVFWQVPELYREASKDKDMIKKYSYGTPNDWIERKLYSPHANKGIFLMLALNLFLFGIPGLTLWAIQM
MWIPLVAGVVNGIGHYWGYRNHESSDSSTNVFPWGLLIAGEELHNNHHTFASSAKFSIKWWEFDLGWFYIRCLSFLKLAK
VKKLPPKLIIDKNKSHIDVDSVKAILGNRFQVISDYYKLVIFPTLRDMQYRIKNRDLKNARHLLKKPNEQLSHADQLRLK
TLLKQHDNLQAVHNYRELLQQIWLKTSLSNKDLLNLIQKWCSQAEESGLLVLRQFASQLKSYSL

Sequences:

>Translated_384_residues
MMFGFLNMTLWGYLLTGFVLTHITTTAVTIYLHRYQTHRALTLHPLVSHFFRFWLWLTTGMTTAEWVAIHRKHHANTDME
GDPHSPQVFNIRKVFWQVPELYREASKDKDMIKKYSYGTPNDWIERKLYSPHANKGIFLMLALNLFLFGIPGLTLWAIQM
MWIPLVAGVVNGIGHYWGYRNHESSDSSTNVFPWGLLIAGEELHNNHHTFASSAKFSIKWWEFDLGWFYIRCLSFLKLAK
VKKLPPKLIIDKNKSHIDVDSVKAILGNRFQVISDYYKLVIFPTLRDMQYRIKNRDLKNARHLLKKPNEQLSHADQLRLK
TLLKQHDNLQAVHNYRELLQQIWLKTSLSNKDLLNLIQKWCSQAEESGLLVLRQFASQLKSYSL
>Mature_384_residues
MMFGFLNMTLWGYLLTGFVLTHITTTAVTIYLHRYQTHRALTLHPLVSHFFRFWLWLTTGMTTAEWVAIHRKHHANTDME
GDPHSPQVFNIRKVFWQVPELYREASKDKDMIKKYSYGTPNDWIERKLYSPHANKGIFLMLALNLFLFGIPGLTLWAIQM
MWIPLVAGVVNGIGHYWGYRNHESSDSSTNVFPWGLLIAGEELHNNHHTFASSAKFSIKWWEFDLGWFYIRCLSFLKLAK
VKKLPPKLIIDKNKSHIDVDSVKAILGNRFQVISDYYKLVIFPTLRDMQYRIKNRDLKNARHLLKKPNEQLSHADQLRLK
TLLKQHDNLQAVHNYRELLQQIWLKTSLSNKDLLNLIQKWCSQAEESGLLVLRQFASQLKSYSL

Specific function: Unknown

COG id: COG1398

COG function: function code I; Fatty-acid desaturase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45110; Mature: 45110

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMFGFLNMTLWGYLLTGFVLTHITTTAVTIYLHRYQTHRALTLHPLVSHFFRFWLWLTTG
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHCC
MTTAEWVAIHRKHHANTDMEGDPHSPQVFNIRKVFWQVPELYREASKDKDMIKKYSYGTP
CCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCC
NDWIERKLYSPHANKGIFLMLALNLFLFGIPGLTLWAIQMMWIPLVAGVVNGIGHYWGYR
HHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NHESSDSSTNVFPWGLLIAGEELHNNHHTFASSAKFSIKWWEFDLGWFYIRCLSFLKLAK
CCCCCCCCCCCCCEEEEEECHHHHCCCCCHHCCCEEEEEEEEECHHHHHHHHHHHHHHHH
VKKLPPKLIIDKNKSHIDVDSVKAILGNRFQVISDYYKLVIFPTLRDMQYRIKNRDLKNA
HHCCCCCEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHEEEHHHHHHHHHHHCCCHHHH
RHLLKKPNEQLSHADQLRLKTLLKQHDNLQAVHNYRELLQQIWLKTSLSNKDLLNLIQKW
HHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
CSQAEESGLLVLRQFASQLKSYSL
HHHHHHCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMFGFLNMTLWGYLLTGFVLTHITTTAVTIYLHRYQTHRALTLHPLVSHFFRFWLWLTTG
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHCC
MTTAEWVAIHRKHHANTDMEGDPHSPQVFNIRKVFWQVPELYREASKDKDMIKKYSYGTP
CCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCC
NDWIERKLYSPHANKGIFLMLALNLFLFGIPGLTLWAIQMMWIPLVAGVVNGIGHYWGYR
HHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NHESSDSSTNVFPWGLLIAGEELHNNHHTFASSAKFSIKWWEFDLGWFYIRCLSFLKLAK
CCCCCCCCCCCCCEEEEEECHHHHCCCCCHHCCCEEEEEEEEECHHHHHHHHHHHHHHHH
VKKLPPKLIIDKNKSHIDVDSVKAILGNRFQVISDYYKLVIFPTLRDMQYRIKNRDLKNA
HHCCCCCEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHEEEHHHHHHHHHHHCCCHHHH
RHLLKKPNEQLSHADQLRLKTLLKQHDNLQAVHNYRELLQQIWLKTSLSNKDLLNLIQKW
HHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
CSQAEESGLLVLRQFASQLKSYSL
HHHHHHCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA