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The map label for this gene is 54293249

Identifier: 54293249

GI number: 54293249

Start: 337401

End: 338000

Strand: Reverse

Name: 54293249

Synonym: lpl0297

Alternate gene names: NA

Gene position: 338000-337401 (Counterclockwise)

Preceding gene: 54293250

Following gene: 54293242

Centisome position: 10.1

GC content: 39.67

Gene sequence:

>600_bases
ATGAAAATAGTGGTGATTGGTGCTACGGGGATAATTGGAAAAGCAATAGTTGCTGAATTAAACCCAAGACATGAAATTAT
TTCAGCGAGCTATAAAAACAGTGATATTCAAGTGGATATAACCAGTAAACAATCAATTGATGCAATGTACAAAAAATTAA
ATACTATTGATGCGGTTGTGTTAGCTACCGGTAAAGTGCACTTTGCTGCCCTAAAAGACATGGGAGAAGACGATTATAAA
ATTGGTTTGACTAATAAACTAATGGGTCAAGTGAATGTAGTCTTGGCTGGATTAGAATACATCAATGATAATGGTTCATT
TACATTAACAAGCGGAATATTAAATCGTGATCCCATTCTCTATGGAAGTTCCGCTGCCATGGTTAATGGTGCATTGGATG
GTTTTATCAAAAGTGCTGCTCTGGAAATGCCAAGAGGTATCCGAATCAATGGTGTAAGCCCCACAGTAATTACCGAAGCC
ATGGAAAACTATGGTCCCTATTTCAGAGGCTATGAACCTGTATCCGCTGCTCGTGCAGCACTCGCCTACAGCAAGAGTAT
TGAGGGCGCTCAAACAGGTCAAGTGTATTGCGTAGGGTAA

Upstream 100 bases:

>100_bases
AGATTGAGGTTTTTCGTAAGTCCTGTATTTAACTCATTGTTGTTACTGTACTATTCTATGTAGGACTTTTGCTTTTTATT
GGATAAAGAGGGAATGAATT

Downstream 100 bases:

>100_bases
CATTAAAATTATTTTAAAAAACAGCAAGCGTGGTTTTGTATATTATTGCAGGTAAAGTAAAGTGAGTTATGGATAAGATC
GGTTGTTATTTCGAACCGTT

Product: short chain dehydrogenase

Products: NA

Alternate protein names: Short-Chain Dehydrogenase/Reductase SDR; Short-Chain Dehydrogenase; Dehydrogenase; 3-Oxoacyl-[Acyl-Carrier-Protein] Reductase; NAD-Dependent Epimerase/Dehydratase; Oxidoreductase; Aklaviketone Reductase; Short Chain Dehydrogenase/Reductase Family Oxidoreductase; DTDP-4-Dehydrorhamnose Reductase; Short Chain Dehydrogenase Family Protein; Dehydrogenases With Different Specificities; Oxidoreductase Short Chain Dehydrogenase/Reductase Family

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MKIVVIGATGIIGKAIVAELNPRHEIISASYKNSDIQVDITSKQSIDAMYKKLNTIDAVVLATGKVHFAALKDMGEDDYK
IGLTNKLMGQVNVVLAGLEYINDNGSFTLTSGILNRDPILYGSSAAMVNGALDGFIKSAALEMPRGIRINGVSPTVITEA
MENYGPYFRGYEPVSAARAALAYSKSIEGAQTGQVYCVG

Sequences:

>Translated_199_residues
MKIVVIGATGIIGKAIVAELNPRHEIISASYKNSDIQVDITSKQSIDAMYKKLNTIDAVVLATGKVHFAALKDMGEDDYK
IGLTNKLMGQVNVVLAGLEYINDNGSFTLTSGILNRDPILYGSSAAMVNGALDGFIKSAALEMPRGIRINGVSPTVITEA
MENYGPYFRGYEPVSAARAALAYSKSIEGAQTGQVYCVG
>Mature_199_residues
MKIVVIGATGIIGKAIVAELNPRHEIISASYKNSDIQVDITSKQSIDAMYKKLNTIDAVVLATGKVHFAALKDMGEDDYK
IGLTNKLMGQVNVVLAGLEYINDNGSFTLTSGILNRDPILYGSSAAMVNGALDGFIKSAALEMPRGIRINGVSPTVITEA
MENYGPYFRGYEPVSAARAALAYSKSIEGAQTGQVYCVG

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21170; Mature: 21170

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIVVIGATGIIGKAIVAELNPRHEIISASYKNSDIQVDITSKQSIDAMYKKLNTIDAVV
CEEEEEECCCHHHHHHHHHCCCCHHEEECCCCCCCEEEEECCCHHHHHHHHHHHHHEEEE
LATGKVHFAALKDMGEDDYKIGLTNKLMGQVNVVLAGLEYINDNGSFTLTSGILNRDPIL
EECCCEEEEEHHHCCCCCEEEECHHHHHHHHHEEEEEEEEECCCCCEEEECCCCCCCCEE
YGSSAAMVNGALDGFIKSAALEMPRGIRINGVSPTVITEAMENYGPYFRGYEPVSAARAA
ECCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHH
LAYSKSIEGAQTGQVYCVG
HHHHCCCCCCCCCEEEEEC
>Mature Secondary Structure
MKIVVIGATGIIGKAIVAELNPRHEIISASYKNSDIQVDITSKQSIDAMYKKLNTIDAVV
CEEEEEECCCHHHHHHHHHCCCCHHEEECCCCCCCEEEEECCCHHHHHHHHHHHHHEEEE
LATGKVHFAALKDMGEDDYKIGLTNKLMGQVNVVLAGLEYINDNGSFTLTSGILNRDPIL
EECCCEEEEEHHHCCCCCEEEECHHHHHHHHHEEEEEEEEECCCCCEEEECCCCCCCCEE
YGSSAAMVNGALDGFIKSAALEMPRGIRINGVSPTVITEAMENYGPYFRGYEPVSAARAA
ECCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHH
LAYSKSIEGAQTGQVYCVG
HHHHCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA