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The map label for this gene is lvhB9 [H]

Identifier: 54293120

GI number: 54293120

Start: 189339

End: 190091

Strand: Direct

Name: lvhB9 [H]

Synonym: lpl0159

Alternate gene names: 54293120

Gene position: 189339-190091 (Clockwise)

Preceding gene: 54293119

Following gene: 54293121

Centisome position: 5.66

GC content: 44.62

Gene sequence:

>753_bases
ATGAAAAAAATACTGTTGAGTGCAGCCGCTCTGCTCTTGTCGTTAGGCACCTATGCCCAAAATAACCCAATGTCTTTACC
AACCGACACCCGAATCAAGAAGGTGGTTTATCGGGAAAACGATGTGATACCAGTTCATGGTATCCCCTTTACCACAACGC
AAATTCAATTTGCAAAGCAAGAGCGGGTTCTTGATATTGAAGGTGGCGACACCACCGCATGGATGGTGACCTATCATCCA
CAACTGGAAAATATGATTTTTGTAAAACCCACGATGTTTGATTCCAATACCAATATGACGGTGATTACCAATCAACGCGC
CTATTATTTTCATTTGGCCAGCACTAAAAAACTGGAACAGGAGCCGGGTAAAAGAACCTATGCTTTGAAATTTGAATACC
CTCAACCACAACCCGTTCACACAAAAAATACGACTCCCAATAAAACGGTACATCCAAAAGTAGTCAACACCGCGTATCGA
TTTAGTGGCAGCCCGCAGCTTGTCCCTCGCCATGTATTTGATGACGGGAAGTTCACCTATTTTGAGCTAAGTAGCCAGGG
TAGCGTTCCAGCGATTTTTGCGGTGGATGACCAAAGCGGAAAGGAATCAACCGTTAATACAAGGCGTGAAGGGAAATTCA
TTGTCGTACAGCGTTTAGCCCCGCAATTTACTTTAAGGCAAGGTGGCCTTACGGCATCGGTCTTTAACGCTCCGGAAATC
AATCGTATCAAAGCAAACAGGAGGCCAAAATGA

Upstream 100 bases:

>100_bases
ACACCAATCCCCCGGATTCCCCTGAAACCCGTTGGAAAAACTGGGATGGATTTGAAGTCACACGCTACTCAAGACAAACC
CGTTTGATGGAGGCTCAAGC

Downstream 100 bases:

>100_bases
GTATGGATGATAAAAAGCGGGAAGATTCTTTGGGCAATCGGACTCAGGTTGCTAAAAATCCAAAACACACAGCAATCAAA
GACAAGTTATTGCTCGCAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MKKILLSAAALLLSLGTYAQNNPMSLPTDTRIKKVVYRENDVIPVHGIPFTTTQIQFAKQERVLDIEGGDTTAWMVTYHP
QLENMIFVKPTMFDSNTNMTVITNQRAYYFHLASTKKLEQEPGKRTYALKFEYPQPQPVHTKNTTPNKTVHPKVVNTAYR
FSGSPQLVPRHVFDDGKFTYFELSSQGSVPAIFAVDDQSGKESTVNTRREGKFIVVQRLAPQFTLRQGGLTASVFNAPEI
NRIKANRRPK

Sequences:

>Translated_250_residues
MKKILLSAAALLLSLGTYAQNNPMSLPTDTRIKKVVYRENDVIPVHGIPFTTTQIQFAKQERVLDIEGGDTTAWMVTYHP
QLENMIFVKPTMFDSNTNMTVITNQRAYYFHLASTKKLEQEPGKRTYALKFEYPQPQPVHTKNTTPNKTVHPKVVNTAYR
FSGSPQLVPRHVFDDGKFTYFELSSQGSVPAIFAVDDQSGKESTVNTRREGKFIVVQRLAPQFTLRQGGLTASVFNAPEI
NRIKANRRPK
>Mature_250_residues
MKKILLSAAALLLSLGTYAQNNPMSLPTDTRIKKVVYRENDVIPVHGIPFTTTQIQFAKQERVLDIEGGDTTAWMVTYHP
QLENMIFVKPTMFDSNTNMTVITNQRAYYFHLASTKKLEQEPGKRTYALKFEYPQPQPVHTKNTTPNKTVHPKVVNTAYR
FSGSPQLVPRHVFDDGKFTYFELSSQGSVPAIFAVDDQSGKESTVNTRREGKFIVVQRLAPQFTLRQGGLTASVFNAPEI
NRIKANRRPK

Specific function: Component of the type IV secretion system virB/virD4 which could be a major virulence determinant for subversion of human endothelial cell (HEC) function [H]

COG id: COG3504

COG function: function code U; Type IV secretory pathway, VirB9 components

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbG/virB9 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010258
- InterPro:   IPR014148 [H]

Pfam domain/function: PF03524 CagX [H]

EC number: NA

Molecular weight: Translated: 28307; Mature: 28307

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKILLSAAALLLSLGTYAQNNPMSLPTDTRIKKVVYRENDVIPVHGIPFTTTQIQFAKQ
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHEEEEECCCCEEEECCCCCCEEEEEEECC
ERVLDIEGGDTTAWMVTYHPQLENMIFVKPTMFDSNTNMTVITNQRAYYFHLASTKKLEQ
CEEEEECCCCEEEEEEEECCCCCCEEEEEEEEECCCCCEEEEECCCEEEEEECCCHHHHC
EPGKRTYALKFEYPQPQPVHTKNTTPNKTVHPKVVNTAYRFSGSPQLVPRHVFDDGKFTY
CCCCEEEEEEEECCCCCCCCCCCCCCCCEECCCEEEEEEEECCCCCCCEEEECCCCCEEE
FELSSQGSVPAIFAVDDQSGKESTVNTRREGKFIVVQRLAPQFTLRQGGLTASVFNAPEI
EEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCEEEEEECCCCC
NRIKANRRPK
EEECCCCCCC
>Mature Secondary Structure
MKKILLSAAALLLSLGTYAQNNPMSLPTDTRIKKVVYRENDVIPVHGIPFTTTQIQFAKQ
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHEEEEECCCCEEEECCCCCCEEEEEEECC
ERVLDIEGGDTTAWMVTYHPQLENMIFVKPTMFDSNTNMTVITNQRAYYFHLASTKKLEQ
CEEEEECCCCEEEEEEEECCCCCCEEEEEEEEECCCCCEEEEECCCEEEEEECCCHHHHC
EPGKRTYALKFEYPQPQPVHTKNTTPNKTVHPKVVNTAYRFSGSPQLVPRHVFDDGKFTY
CCCCEEEEEEEECCCCCCCCCCCCCCCCEECCCEEEEEEEECCCCCCCEEEECCCCCEEE
FELSSQGSVPAIFAVDDQSGKESTVNTRREGKFIVVQRLAPQFTLRQGGLTASVFNAPEI
EEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCEEEEEECCCCC
NRIKANRRPK
EEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA