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The map label for this gene is gcsA [H]

Identifier: 54293077

GI number: 54293077

Start: 136182

End: 137552

Strand: Reverse

Name: gcsA [H]

Synonym: lpl0115

Alternate gene names: 54293077

Gene position: 137552-136182 (Counterclockwise)

Preceding gene: 54293078

Following gene: 54293076

Centisome position: 4.11

GC content: 44.35

Gene sequence:

>1371_bases
ATGCCTTATATTCCACACACGCCCAATGATACCAAAGAGATGCTAGCGGCAATTGGTGCTCAAGACATTCAGGATTTATT
TGATGAAATACCAGCTTCTTTGCAATATGCAGGATTTCAAAATATCCCCGCTGGCATTAACGAAATGGAAATGTTGAAAG
AAGCCCAGAATCAAGCCCAAAAGAATCGCAACGGTATATGTTTTATTGGTGCTGGATGTTATGAGCATCATATTCCAGCA
GCCGTGTGGGATATTGCATCTCGCGGTGAATTTTTAACTGCCTACACACCCTATCAAGCTGAGGCCAGCCAGGGAACTTT
GCAATTATTATATGAATATCAAACCATGATCTGTGAGTTGACCGGCATGGAAGTATCCAATGCGTCAATGTATGACGGAG
CAACTGCGTTAGCTGAAGCAGTACTAATGGCAGTCCGCCTTAATAAACACAGCAAAACCAACAGGGTACTGATTGCAGGC
ACAGTTCATCCTTTTTATCGCGAAACCATTGAAACGATAGTACGTAATCAGCATATTGAAGTCATCACCCTCCCTTTTGA
TGAACAGCAAGGAATCACTGATCTTGGCTCTCTCAATCAATACACCGGAGAAGATATTACAGCTTTGGTCATAGCCCAAC
CGAATTTCTTTGGTTGCCTCGAACAAGTCGATAAAATGACTTCCTGGGCACATCATAACAAAACAATCAGTGTAGCTTGT
ATTAACCCGACTTCATTGGCTTTATTAAAACCACCCGGCTCATGGGGAGAACATGGGGTAGACATCGTATGCGGTGAAGG
ACAACCTTTAGGCTCACCTATGGCATCAGGAGGCCCTTATTTTGGTTTTCTGAGCACCCGTATGGCCCATGTCAGACAAA
TGCCCGGAAGAATAATTGGCCGCACGGTAGACAAAGATGGAAAAACCGGTTTTAGTTTAACTCTCCAGGCAAGAGAGCAG
CATATTCGGCGTGCTAAAGCCACTTCAAACATATGCACCAACCAAGGTTTACTTGTAACCGCAGCAACTATCTATATGAG
TCTTTTAGGACCGGAAGGTCTAAGCCAAGTGGCAACTCAATGCCATCAAAACACTCATGAATTAATTACTGCCTTAACAC
AAATCGAGGGGGTAGAACAGGCATTCAAAGCTTCGTTTTTCCATGAAGCCTTGATTAAACTAAACCAACCAGTTCAGTCC
GTATTGCAGCAACTGGCCGACGCTGGAATTGCTGGAGGTTACGCACCGGAACAACACTACCCTCAGCTAGCCAATACGCT
GTTAGTTTGTGCAACAGAGGTGCGCACTGCAGAGGATATCGCGAAATATGCAAAAACATTAAAAGCCATAATGTCCAAGC
GAGGTGCCTGA

Upstream 100 bases:

>100_bases
AAGGCTGGCTCGTGAAGCTAAAGCCCAGCCATCCAGATGAAATCAAAAGCCTGTTGAGTGATGAGCAATATCAAAATGAG
ATAGCTGAGGAAAATTAATC

Downstream 100 bases:

>100_bases
TGTTTATTGTGCAATTAACCTATTTAGTTCCTATCAATGAAGTAAACAAATATCTGCAGGCACACAGGGAGTTTCTAGAT
TACCACTACAAACAAGGGTT

Product: glycine dehydrogenase subunit 1

Products: NA

Alternate protein names: Glycine cleavage system P-protein subunit 1; Glycine decarboxylase subunit 1 [H]

Number of amino acids: Translated: 456; Mature: 455

Protein sequence:

>456_residues
MPYIPHTPNDTKEMLAAIGAQDIQDLFDEIPASLQYAGFQNIPAGINEMEMLKEAQNQAQKNRNGICFIGAGCYEHHIPA
AVWDIASRGEFLTAYTPYQAEASQGTLQLLYEYQTMICELTGMEVSNASMYDGATALAEAVLMAVRLNKHSKTNRVLIAG
TVHPFYRETIETIVRNQHIEVITLPFDEQQGITDLGSLNQYTGEDITALVIAQPNFFGCLEQVDKMTSWAHHNKTISVAC
INPTSLALLKPPGSWGEHGVDIVCGEGQPLGSPMASGGPYFGFLSTRMAHVRQMPGRIIGRTVDKDGKTGFSLTLQAREQ
HIRRAKATSNICTNQGLLVTAATIYMSLLGPEGLSQVATQCHQNTHELITALTQIEGVEQAFKASFFHEALIKLNQPVQS
VLQQLADAGIAGGYAPEQHYPQLANTLLVCATEVRTAEDIAKYAKTLKAIMSKRGA

Sequences:

>Translated_456_residues
MPYIPHTPNDTKEMLAAIGAQDIQDLFDEIPASLQYAGFQNIPAGINEMEMLKEAQNQAQKNRNGICFIGAGCYEHHIPA
AVWDIASRGEFLTAYTPYQAEASQGTLQLLYEYQTMICELTGMEVSNASMYDGATALAEAVLMAVRLNKHSKTNRVLIAG
TVHPFYRETIETIVRNQHIEVITLPFDEQQGITDLGSLNQYTGEDITALVIAQPNFFGCLEQVDKMTSWAHHNKTISVAC
INPTSLALLKPPGSWGEHGVDIVCGEGQPLGSPMASGGPYFGFLSTRMAHVRQMPGRIIGRTVDKDGKTGFSLTLQAREQ
HIRRAKATSNICTNQGLLVTAATIYMSLLGPEGLSQVATQCHQNTHELITALTQIEGVEQAFKASFFHEALIKLNQPVQS
VLQQLADAGIAGGYAPEQHYPQLANTLLVCATEVRTAEDIAKYAKTLKAIMSKRGA
>Mature_455_residues
PYIPHTPNDTKEMLAAIGAQDIQDLFDEIPASLQYAGFQNIPAGINEMEMLKEAQNQAQKNRNGICFIGAGCYEHHIPAA
VWDIASRGEFLTAYTPYQAEASQGTLQLLYEYQTMICELTGMEVSNASMYDGATALAEAVLMAVRLNKHSKTNRVLIAGT
VHPFYRETIETIVRNQHIEVITLPFDEQQGITDLGSLNQYTGEDITALVIAQPNFFGCLEQVDKMTSWAHHNKTISVACI
NPTSLALLKPPGSWGEHGVDIVCGEGQPLGSPMASGGPYFGFLSTRMAHVRQMPGRIIGRTVDKDGKTGFSLTLQAREQH
IRRAKATSNICTNQGLLVTAATIYMSLLGPEGLSQVATQCHQNTHELITALTQIEGVEQAFKASFFHEALIKLNQPVQSV
LQQLADAGIAGGYAPEQHYPQLANTLLVCATEVRTAEDIAKYAKTLKAIMSKRGA

Specific function: The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide co

COG id: COG0403

COG function: function code E; Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gcvP family. N-terminal subunit subfamily [H]

Homologues:

Organism=Homo sapiens, GI108773801, Length=412, Percent_Identity=33.252427184466, Blast_Score=213, Evalue=2e-55,
Organism=Escherichia coli, GI1789269, Length=365, Percent_Identity=35.3424657534247, Blast_Score=192, Evalue=3e-50,
Organism=Caenorhabditis elegans, GI17535605, Length=367, Percent_Identity=36.7847411444142, Blast_Score=208, Evalue=4e-54,
Organism=Saccharomyces cerevisiae, GI6323843, Length=413, Percent_Identity=32.6876513317191, Blast_Score=205, Evalue=1e-53,
Organism=Drosophila melanogaster, GI24645648, Length=388, Percent_Identity=34.2783505154639, Blast_Score=226, Evalue=3e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020580
- InterPro:   IPR020581
- InterPro:   IPR023010
- InterPro:   IPR015424
- InterPro:   IPR015421 [H]

Pfam domain/function: PF02347 GDC-P [H]

EC number: =1.4.4.2 [H]

Molecular weight: Translated: 49752; Mature: 49621

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYIPHTPNDTKEMLAAIGAQDIQDLFDEIPASLQYAGFQNIPAGINEMEMLKEAQNQAQ
CCCCCCCCCHHHHHHHHHCHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHHH
KNRNGICFIGAGCYEHHIPAAVWDIASRGEFLTAYTPYQAEASQGTLQLLYEYQTMICEL
HCCCCEEEEECCHHHHCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
TGMEVSNASMYDGATALAEAVLMAVRLNKHSKTNRVLIAGTVHPFYRETIETIVRNQHIE
CCCEECCCCHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEE
VITLPFDEQQGITDLGSLNQYTGEDITALVIAQPNFFGCLEQVDKMTSWAHHNKTISVAC
EEEECCCCCCCCCHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEE
INPTSLALLKPPGSWGEHGVDIVCGEGQPLGSPMASGGPYFGFLSTRMAHVRQMPGRIIG
ECCCCEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHC
RTVDKDGKTGFSLTLQAREQHIRRAKATSNICTNQGLLVTAATIYMSLLGPEGLSQVATQ
CCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
CHQNTHELITALTQIEGVEQAFKASFFHEALIKLNQPVQSVLQQLADAGIAGGYAPEQHY
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCHHHH
PQLANTLLVCATEVRTAEDIAKYAKTLKAIMSKRGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PYIPHTPNDTKEMLAAIGAQDIQDLFDEIPASLQYAGFQNIPAGINEMEMLKEAQNQAQ
CCCCCCCCHHHHHHHHHCHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHHH
KNRNGICFIGAGCYEHHIPAAVWDIASRGEFLTAYTPYQAEASQGTLQLLYEYQTMICEL
HCCCCEEEEECCHHHHCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
TGMEVSNASMYDGATALAEAVLMAVRLNKHSKTNRVLIAGTVHPFYRETIETIVRNQHIE
CCCEECCCCHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEE
VITLPFDEQQGITDLGSLNQYTGEDITALVIAQPNFFGCLEQVDKMTSWAHHNKTISVAC
EEEECCCCCCCCCHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEE
INPTSLALLKPPGSWGEHGVDIVCGEGQPLGSPMASGGPYFGFLSTRMAHVRQMPGRIIG
ECCCCEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHC
RTVDKDGKTGFSLTLQAREQHIRRAKATSNICTNQGLLVTAATIYMSLLGPEGLSQVATQ
CCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
CHQNTHELITALTQIEGVEQAFKASFFHEALIKLNQPVQSVLQQLADAGIAGGYAPEQHY
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCHHHH
PQLANTLLVCATEVRTAEDIAKYAKTLKAIMSKRGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA