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The map label for this gene is 54293073

Identifier: 54293073

GI number: 54293073

Start: 129219

End: 130256

Strand: Direct

Name: 54293073

Synonym: lpl0110

Alternate gene names: NA

Gene position: 129219-130256 (Clockwise)

Preceding gene: 54293072

Following gene: 54293080

Centisome position: 3.86

GC content: 34.97

Gene sequence:

>1038_bases
ATGGTTATGCGATCGTTTTCTTTTTATTACCAACATCTAGAAAATGTTAGCAGAAGTTTTAGTTTTTGTATAAGCCAGTT
AACTTCTCCAGCAAAAGAATGGGTTGCGTTGAGTTATTTACTTTTGCGTGTTGCAGACAGTATTGAAGATGCCAAATGGC
AAGATCTTCAAACGCAAAGTGATTCATTTGCAGCTTTTAAATCATTTTTAGTCCAAACACCGGCAAACGATCAATTCACA
AAATGGCTTTCCAGCTTTCCTTCGCAGCTTCCATTAGGGGAGAAACAACTTCTATGTGCCGTCCCTCTTTTGTTGGAAGA
AAAAGATAATTTACCTGAATCCATCAAGCAATCTGTGATAAAAACAATTTTGCAAGTAGTGGATGGAATGCATTATTTCC
TTAATCATTATCATATGGAATGCAAAATCGTATTTCCTTCATTAGTTATCACTAATCAATACTGTTTTTTTGTTGCAGGA
TTGGTTGGCAAATTATTGTCGCACATATTTACTGATTTACTATCTAATTTTAAGTGGACAGCCAGCCTGTTAAATCAAGC
CTTTCACTTTGGTTTCTTTTTACAAAAAATCAATCTCTTGAAAGATAAAATGGATGATGAAGCAAATGGGCGTTATTATA
TTTCTTCAGAAAATAGCTTGCGCGAGAGTTTGGTTATTCATGCACACCATTCACTGGCTTATGTAAAGAGCATCCCAATT
ATTGAAGGACGCCCGTATCGCTTATTTTGTGCCTGGTCTTTATTTATTGGTTTGGCTTCATTGAAATGGCTTGATAAATA
TGGCCTCCGACAAAAAATTAAACCCCGAGAAACTTATTATCTGGTTAACCAAATAAATCTGTTAATTGATGATAACCGCG
CTTTAGAAAAATTATTTAACAGCTATCTTCCAGGACAGTATGAAGAAGGTTCATGTTATGCTTCTGAATCAACGAAAAAA
ATACCAACTTGGTTTAAGAAAATTTACGATGGTGAGATCGATTCTCTGACATTGTTTGATCTGGATATCGAAGTATGA

Upstream 100 bases:

>100_bases
GGAAAAATTATATTTCATATGATGAGTTGTCAAAAACAGTGGAAGAAAATTACGAGAGAATAAAACGGGCATTATCGAAA
AGCGAACATCAACTTGGCTG

Downstream 100 bases:

>100_bases
TGAGGGAGATTTCATGCAAACTGTCGCAAATTTATGGACGGTTTTAAACAAAATTACACCTGCAATTGGCTGAGCAATTG
CCTGATCTGGTTTCCCATCA

Product: hypothetical protein

Products: NA

Alternate protein names: Farnesyl-Diphosphate Farnesyltransferase; Squalene Synthase; Squalene And Phytoene Synthases; Squalene And Phytoene Synthase

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MVMRSFSFYYQHLENVSRSFSFCISQLTSPAKEWVALSYLLLRVADSIEDAKWQDLQTQSDSFAAFKSFLVQTPANDQFT
KWLSSFPSQLPLGEKQLLCAVPLLLEEKDNLPESIKQSVIKTILQVVDGMHYFLNHYHMECKIVFPSLVITNQYCFFVAG
LVGKLLSHIFTDLLSNFKWTASLLNQAFHFGFFLQKINLLKDKMDDEANGRYYISSENSLRESLVIHAHHSLAYVKSIPI
IEGRPYRLFCAWSLFIGLASLKWLDKYGLRQKIKPRETYYLVNQINLLIDDNRALEKLFNSYLPGQYEEGSCYASESTKK
IPTWFKKIYDGEIDSLTLFDLDIEV

Sequences:

>Translated_345_residues
MVMRSFSFYYQHLENVSRSFSFCISQLTSPAKEWVALSYLLLRVADSIEDAKWQDLQTQSDSFAAFKSFLVQTPANDQFT
KWLSSFPSQLPLGEKQLLCAVPLLLEEKDNLPESIKQSVIKTILQVVDGMHYFLNHYHMECKIVFPSLVITNQYCFFVAG
LVGKLLSHIFTDLLSNFKWTASLLNQAFHFGFFLQKINLLKDKMDDEANGRYYISSENSLRESLVIHAHHSLAYVKSIPI
IEGRPYRLFCAWSLFIGLASLKWLDKYGLRQKIKPRETYYLVNQINLLIDDNRALEKLFNSYLPGQYEEGSCYASESTKK
IPTWFKKIYDGEIDSLTLFDLDIEV
>Mature_345_residues
MVMRSFSFYYQHLENVSRSFSFCISQLTSPAKEWVALSYLLLRVADSIEDAKWQDLQTQSDSFAAFKSFLVQTPANDQFT
KWLSSFPSQLPLGEKQLLCAVPLLLEEKDNLPESIKQSVIKTILQVVDGMHYFLNHYHMECKIVFPSLVITNQYCFFVAG
LVGKLLSHIFTDLLSNFKWTASLLNQAFHFGFFLQKINLLKDKMDDEANGRYYISSENSLRESLVIHAHHSLAYVKSIPI
IEGRPYRLFCAWSLFIGLASLKWLDKYGLRQKIKPRETYYLVNQINLLIDDNRALEKLFNSYLPGQYEEGSCYASESTKK
IPTWFKKIYDGEIDSLTLFDLDIEV

Specific function: Unknown

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI67089147, Length=214, Percent_Identity=28.9719626168224, Blast_Score=70, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39985; Mature: 39985

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS01044 SQUALEN_PHYTOEN_SYN_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVMRSFSFYYQHLENVSRSFSFCISQLTSPAKEWVALSYLLLRVADSIEDAKWQDLQTQS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCC
DSFAAFKSFLVQTPANDQFTKWLSSFPSQLPLGEKQLLCAVPLLLEEKDNLPESIKQSVI
HHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
KTILQVVDGMHYFLNHYHMECKIVFPSLVITNQYCFFVAGLVGKLLSHIFTDLLSNFKWT
HHHHHHHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
ASLLNQAFHFGFFLQKINLLKDKMDDEANGRYYISSENSLRESLVIHAHHSLAYVKSIPI
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCC
IEGRPYRLFCAWSLFIGLASLKWLDKYGLRQKIKPRETYYLVNQINLLIDDNRALEKLFN
CCCCCCEEHHHHHHHHHHHHHHHHHHHCHHHCCCCHHHEEEEEHEEEEECCCHHHHHHHH
SYLPGQYEEGSCYASESTKKIPTWFKKIYDGEIDSLTLFDLDIEV
HHCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCEEEEEEEEECC
>Mature Secondary Structure
MVMRSFSFYYQHLENVSRSFSFCISQLTSPAKEWVALSYLLLRVADSIEDAKWQDLQTQS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCC
DSFAAFKSFLVQTPANDQFTKWLSSFPSQLPLGEKQLLCAVPLLLEEKDNLPESIKQSVI
HHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
KTILQVVDGMHYFLNHYHMECKIVFPSLVITNQYCFFVAGLVGKLLSHIFTDLLSNFKWT
HHHHHHHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
ASLLNQAFHFGFFLQKINLLKDKMDDEANGRYYISSENSLRESLVIHAHHSLAYVKSIPI
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCC
IEGRPYRLFCAWSLFIGLASLKWLDKYGLRQKIKPRETYYLVNQINLLIDDNRALEKLFN
CCCCCCEEHHHHHHHHHHHHHHHHHHHCHHHCCCCHHHEEEEEHEEEEECCCHHHHHHHH
SYLPGQYEEGSCYASESTKKIPTWFKKIYDGEIDSLTLFDLDIEV
HHCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA