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The map label for this gene is intF [H]

Identifier: 54293028

GI number: 54293028

Start: 72587

End: 73840

Strand: Direct

Name: intF [H]

Synonym: lpl0065

Alternate gene names: 54293028

Gene position: 72587-73840 (Clockwise)

Preceding gene: 54293027

Following gene: 54293029

Centisome position: 2.17

GC content: 41.71

Gene sequence:

>1254_bases
ATGAAAATCACCAAATCGGCCGTTGATAAATTACCTTTGCCTGTTTCAACGACTCAGGGAAGAACCGCACAAAAACGTTA
TTACGATGAGGTAATGAAAGGATTTGGTATCCGGGTTACCTCCGGTGGTACAAAAGCCTTTTTTATTGAAAAAATAATAA
AGAATAAATTATCTCGCATCACTTTAGGTCGTTACCCTGAACTCACCGTCGAAATGGCAAGGAAAGAAGCGCAAAAGCTA
CTCGGACAAATTGCAACGGGAATAGATCCAGTTGCTGAAAAGCGCGCTGAAAAAATGCGGCAAATGACCTTAAACGATGT
ATTTAACGACTACCTTCAAGTGCGCAAATCGCTAAAGCACAATACCCTATATAATTACAAAAAAGTGCTAGCCACAGGGT
TTGCTGGTTGGGCCGATAAACCCTTTCTTGCCATTACCAAAGATAGTGTTGCCAAGCATCATAAAAAATTAGGGAATGAA
CGTGGTGAAGCCTATGCCAATTTAGCCATGCGTCTACTGCGCGCCCTTTTCAATTTTGCGGCTGGTCAATATGAAGATTC
ACAAGGTAAATCATTGATTACCGAAAACCCGGTAAAACGTTTATCACAAACTAGAGCCTGGTATCGGGTTGAGCGTCGTC
AAAGTTTTATTAAAGCTCATGAATTGGCGGCTTGGTATCTTGGAGTGCAGCAATTACAAAGTGAAATTTTGCGAGATTAC
CTATTGTTAATCATACTAACGGGATTACGGCGTCAGGAAGCAGCCACTTTACGCTGGGATCAAGTTGATCTCAACGCTAA
AACCTTAACTGTACTTGATACTAAAAACCACGAATCTCATACCCTCCCTCTTTCCGGCTATCTTTATGAATTGCTCTTAT
CGCGCAGTCAAAACAGAATCAATGAGTATGTTTTCCCCGGTAAAGGAGCAGCAGGCCATATAATCGAACCACGTAAGCAA
ATGGCCAATGTTACCAAGCTCTCAGGCATTCATTTTACAGTACATGATCTAAGGCGCACTTTTATTACCATAGCCGAGGG
TTTAGATGTTTCAGCTTATGCTTTAAAACGCTTAATGAACCATAAAATGAATGGGGATATTACCGCGGGCTATATCGTGA
CCGATGTTGAGCGCTTAAGGAAACCAATGCAGCAGATTACCGATTATTTCTTAAAGTGTATGGGGGTTCAGCCATCTGCC
ACAATATTGGCAATCCAGCCGGCACAAGAGAGTGATATGAAAGATTTGGGTTAA

Upstream 100 bases:

>100_bases
TATTTATAAGGCCTAAAGGCTTTTTATATAGATCAATTACTTTTATTGTGTTTTAATCATTCCTTCGACACATATTCGAC
ACGTTTGAATAAGAGGGAAA

Downstream 100 bases:

>100_bases
AACTTATATAATATATCGATTTTCATTATATTGTAAAAGTTTTAACACAGATCAATAAAATCATGGCGTTCATTTTTTAT
GTTGTTCATTTTTCTTGAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 417

Protein sequence:

>417_residues
MKITKSAVDKLPLPVSTTQGRTAQKRYYDEVMKGFGIRVTSGGTKAFFIEKIIKNKLSRITLGRYPELTVEMARKEAQKL
LGQIATGIDPVAEKRAEKMRQMTLNDVFNDYLQVRKSLKHNTLYNYKKVLATGFAGWADKPFLAITKDSVAKHHKKLGNE
RGEAYANLAMRLLRALFNFAAGQYEDSQGKSLITENPVKRLSQTRAWYRVERRQSFIKAHELAAWYLGVQQLQSEILRDY
LLLIILTGLRRQEAATLRWDQVDLNAKTLTVLDTKNHESHTLPLSGYLYELLLSRSQNRINEYVFPGKGAAGHIIEPRKQ
MANVTKLSGIHFTVHDLRRTFITIAEGLDVSAYALKRLMNHKMNGDITAGYIVTDVERLRKPMQQITDYFLKCMGVQPSA
TILAIQPAQESDMKDLG

Sequences:

>Translated_417_residues
MKITKSAVDKLPLPVSTTQGRTAQKRYYDEVMKGFGIRVTSGGTKAFFIEKIIKNKLSRITLGRYPELTVEMARKEAQKL
LGQIATGIDPVAEKRAEKMRQMTLNDVFNDYLQVRKSLKHNTLYNYKKVLATGFAGWADKPFLAITKDSVAKHHKKLGNE
RGEAYANLAMRLLRALFNFAAGQYEDSQGKSLITENPVKRLSQTRAWYRVERRQSFIKAHELAAWYLGVQQLQSEILRDY
LLLIILTGLRRQEAATLRWDQVDLNAKTLTVLDTKNHESHTLPLSGYLYELLLSRSQNRINEYVFPGKGAAGHIIEPRKQ
MANVTKLSGIHFTVHDLRRTFITIAEGLDVSAYALKRLMNHKMNGDITAGYIVTDVERLRKPMQQITDYFLKCMGVQPSA
TILAIQPAQESDMKDLG
>Mature_417_residues
MKITKSAVDKLPLPVSTTQGRTAQKRYYDEVMKGFGIRVTSGGTKAFFIEKIIKNKLSRITLGRYPELTVEMARKEAQKL
LGQIATGIDPVAEKRAEKMRQMTLNDVFNDYLQVRKSLKHNTLYNYKKVLATGFAGWADKPFLAITKDSVAKHHKKLGNE
RGEAYANLAMRLLRALFNFAAGQYEDSQGKSLITENPVKRLSQTRAWYRVERRQSFIKAHELAAWYLGVQQLQSEILRDY
LLLIILTGLRRQEAATLRWDQVDLNAKTLTVLDTKNHESHTLPLSGYLYELLLSRSQNRINEYVFPGKGAAGHIIEPRKQ
MANVTKLSGIHFTVHDLRRTFITIAEGLDVSAYALKRLMNHKMNGDITAGYIVTDVERLRKPMQQITDYFLKCMGVQPSA
TILAIQPAQESDMKDLG

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI2367104, Length=412, Percent_Identity=27.1844660194175, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI145693166, Length=371, Percent_Identity=25.3369272237197, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47423; Mature: 47423

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKITKSAVDKLPLPVSTTQGRTAQKRYYDEVMKGFGIRVTSGGTKAFFIEKIIKNKLSRI
CCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHC
TLGRYPELTVEMARKEAQKLLGQIATGIDPVAEKRAEKMRQMTLNDVFNDYLQVRKSLKH
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NTLYNYKKVLATGFAGWADKPFLAITKDSVAKHHKKLGNERGEAYANLAMRLLRALFNFA
HHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
AGQYEDSQGKSLITENPVKRLSQTRAWYRVERRQSFIKAHELAAWYLGVQQLQSEILRDY
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLLIILTGLRRQEAATLRWDQVDLNAKTLTVLDTKNHESHTLPLSGYLYELLLSRSQNRI
HHHHHHHHCCHHHHHHEEECEEECCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
NEYVFPGKGAAGHIIEPRKQMANVTKLSGIHFTVHDLRRTFITIAEGLDVSAYALKRLMN
HHCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHC
HKMNGDITAGYIVTDVERLRKPMQQITDYFLKCMGVQPSATILAIQPAQESDMKDLG
CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MKITKSAVDKLPLPVSTTQGRTAQKRYYDEVMKGFGIRVTSGGTKAFFIEKIIKNKLSRI
CCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHC
TLGRYPELTVEMARKEAQKLLGQIATGIDPVAEKRAEKMRQMTLNDVFNDYLQVRKSLKH
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NTLYNYKKVLATGFAGWADKPFLAITKDSVAKHHKKLGNERGEAYANLAMRLLRALFNFA
HHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
AGQYEDSQGKSLITENPVKRLSQTRAWYRVERRQSFIKAHELAAWYLGVQQLQSEILRDY
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLLIILTGLRRQEAATLRWDQVDLNAKTLTVLDTKNHESHTLPLSGYLYELLLSRSQNRI
HHHHHHHHCCHHHHHHEEECEEECCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
NEYVFPGKGAAGHIIEPRKQMANVTKLSGIHFTVHDLRRTFITIAEGLDVSAYALKRLMN
HHCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHC
HKMNGDITAGYIVTDVERLRKPMQQITDYFLKCMGVQPSATILAIQPAQESDMKDLG
CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]