Click here to switch to the map view.

The map label for this gene is 54292972

Identifier: 54292972

GI number: 54292972

Start: 11140

End: 12399

Strand: Reverse

Name: 54292972

Synonym: lpl0008

Alternate gene names: NA

Gene position: 12399-11140 (Counterclockwise)

Preceding gene: 54292975

Following gene: 54292971

Centisome position: 0.37

GC content: 38.73

Gene sequence:

>1260_bases
ATGACGTTTACTTGCGATGAATTAAAAGGATTAGAGCACCCCTACGAAGTACTTGGCAATGGTGACGCACTGGCGGAAAA
CCGAGAAGAGCTAAACAAATTAACCAATGATGAAAAATTAGTTTTAGCCAGCCGCCTCGTTTTGGAGTGTCCCGTTAATG
AATTAAAAGATTTTGCTCATGCCATAGAAGCAGCAAGAATGCCACAAGATGATAGCGATACCTTTCATTCCTTTTTATTC
CAGGCTTATCAGGTAAAAAAAAGAATCATTTCCTTGCTCGATCCGCGCAATAAAAACCCTCATTCCATGATATTGGAGAA
GGAATTTGATGGTGAGCTATTTAATAATTTTAATAAATTGGCTATTGATGTATTAAATAACAATGAAGTCGCAATTGCAT
TGAGACTGGCTGAAACAACTCCTGCTCAAGATCGTTCACGAGTATCTCAAAATATCAACAATATTTTCCCACAGTCTCTG
TTTGCCGCTAAAGTCGGCCACGCTTTTGCCGTTCGCAGAGACATAGAGCGACTATTGCTAGGTGAAAGGCCTGATCAATT
CTTCTCAAGTCGTGAATTCAAGATCGATTCTTGTATCGAATTTGCAAGTTTATTCAATGTAATTAATGATAAAGAATCTT
CCATTGCCGGAAAACTTGCACTGAGAACCCCTGCTGAAAATCGCACTGATGTAGTAATGAAAATTAAAGGTTTTTGTGCC
GAGGATAGTGAACTTGCGATAAAAGTCCAATCTGCTTTTGCATTAAGAAGGGATATAGAGCGCAATCTATTAGGTGATAA
TCCAGAACAATTTTTCAATAGCCGAGATTTTAGCGTTGATTTATGCCTTGAGTTTGCAATTTTATTCCCGGAATTATTAA
AAGGCCATGAAAAAGCTATCGGAGAAAAACTAGCTAAGCTGGATGCTAAAGTACGCTCAGATATCAGTAGAAAACTGGAA
ATGATCAATGGAGCAGCTCACGAGCAATCAAGCCCTTTCAGAATAATAGCCAGTGCCATGGTGCCTAAAGAAGAACCTTG
CCTGACAAAGCCCACTCCCATTGTCTTGCCATCTACTGAAGAAATTATACCAAAGCAAGAATCAACAACCAGTTTACGCA
ACAGGAACGTTTTATTTAAAGAACAAACAGAAGAACACAAGAAGAAAAACTCTCAGATGGAACCCATTGTCTCAGATTCT
GAAGAAGAAGAAGAGAAACAGAATTGCTGGACTAGTTTTTGTGGGTTATTTGGCAAGTAA

Upstream 100 bases:

>100_bases
TATTTTCATGACAGCGTGGTTTGAATTCGTTAATATAGTCAATCAAAATATTTTTGCACATCTAGAATCAGGCTACTGAT
GAGTTAATAAGGAGATTTTA

Downstream 100 bases:

>100_bases
AGCAGCCATATCTTTTGCCCTTACTTGGTTAAGGGCAACTTTACACTTTTTTACCCATTCTTTACACATCATGTAGCAAT
AATTCATGTTAATATTTCTC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MTFTCDELKGLEHPYEVLGNGDALAENREELNKLTNDEKLVLASRLVLECPVNELKDFAHAIEAARMPQDDSDTFHSFLF
QAYQVKKRIISLLDPRNKNPHSMILEKEFDGELFNNFNKLAIDVLNNNEVAIALRLAETTPAQDRSRVSQNINNIFPQSL
FAAKVGHAFAVRRDIERLLLGERPDQFFSSREFKIDSCIEFASLFNVINDKESSIAGKLALRTPAENRTDVVMKIKGFCA
EDSELAIKVQSAFALRRDIERNLLGDNPEQFFNSRDFSVDLCLEFAILFPELLKGHEKAIGEKLAKLDAKVRSDISRKLE
MINGAAHEQSSPFRIIASAMVPKEEPCLTKPTPIVLPSTEEIIPKQESTTSLRNRNVLFKEQTEEHKKKNSQMEPIVSDS
EEEEEKQNCWTSFCGLFGK

Sequences:

>Translated_419_residues
MTFTCDELKGLEHPYEVLGNGDALAENREELNKLTNDEKLVLASRLVLECPVNELKDFAHAIEAARMPQDDSDTFHSFLF
QAYQVKKRIISLLDPRNKNPHSMILEKEFDGELFNNFNKLAIDVLNNNEVAIALRLAETTPAQDRSRVSQNINNIFPQSL
FAAKVGHAFAVRRDIERLLLGERPDQFFSSREFKIDSCIEFASLFNVINDKESSIAGKLALRTPAENRTDVVMKIKGFCA
EDSELAIKVQSAFALRRDIERNLLGDNPEQFFNSRDFSVDLCLEFAILFPELLKGHEKAIGEKLAKLDAKVRSDISRKLE
MINGAAHEQSSPFRIIASAMVPKEEPCLTKPTPIVLPSTEEIIPKQESTTSLRNRNVLFKEQTEEHKKKNSQMEPIVSDS
EEEEEKQNCWTSFCGLFGK
>Mature_418_residues
TFTCDELKGLEHPYEVLGNGDALAENREELNKLTNDEKLVLASRLVLECPVNELKDFAHAIEAARMPQDDSDTFHSFLFQ
AYQVKKRIISLLDPRNKNPHSMILEKEFDGELFNNFNKLAIDVLNNNEVAIALRLAETTPAQDRSRVSQNINNIFPQSLF
AAKVGHAFAVRRDIERLLLGERPDQFFSSREFKIDSCIEFASLFNVINDKESSIAGKLALRTPAENRTDVVMKIKGFCAE
DSELAIKVQSAFALRRDIERNLLGDNPEQFFNSRDFSVDLCLEFAILFPELLKGHEKAIGEKLAKLDAKVRSDISRKLEM
INGAAHEQSSPFRIIASAMVPKEEPCLTKPTPIVLPSTEEIIPKQESTTSLRNRNVLFKEQTEEHKKKNSQMEPIVSDSE
EEEEKQNCWTSFCGLFGK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47537; Mature: 47405

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFTCDELKGLEHPYEVLGNGDALAENREELNKLTNDEKLVLASRLVLECPVNELKDFAH
CCCCCHHHHCCCCCHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHH
AIEAARMPQDDSDTFHSFLFQAYQVKKRIISLLDPRNKNPHSMILEKEFDGELFNNFNKL
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHCCCCCE
AIDVLNNNEVAIALRLAETTPAQDRSRVSQNINNIFPQSLFAAKVGHAFAVRRDIERLLL
EEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GERPDQFFSSREFKIDSCIEFASLFNVINDKESSIAGKLALRTPAENRTDVVMKIKGFCA
CCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHCEEEEECCCCCCCCEEEEEECCCC
EDSELAIKVQSAFALRRDIERNLLGDNPEQFFNSRDFSVDLCLEFAILFPELLKGHEKAI
CCCCEEEEHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GEKLAKLDAKVRSDISRKLEMINGAAHEQSSPFRIIASAMVPKEEPCLTKPTPIVLPSTE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEECCCCH
EIIPKQESTTSLRNRNVLFKEQTEEHKKKNSQMEPIVSDSEEEEEKQNCWTSFCGLFGK
HHCCCCCHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TFTCDELKGLEHPYEVLGNGDALAENREELNKLTNDEKLVLASRLVLECPVNELKDFAH
CCCCHHHHCCCCCHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHH
AIEAARMPQDDSDTFHSFLFQAYQVKKRIISLLDPRNKNPHSMILEKEFDGELFNNFNKL
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHCCCCCE
AIDVLNNNEVAIALRLAETTPAQDRSRVSQNINNIFPQSLFAAKVGHAFAVRRDIERLLL
EEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GERPDQFFSSREFKIDSCIEFASLFNVINDKESSIAGKLALRTPAENRTDVVMKIKGFCA
CCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHCEEEEECCCCCCCCEEEEEECCCC
EDSELAIKVQSAFALRRDIERNLLGDNPEQFFNSRDFSVDLCLEFAILFPELLKGHEKAI
CCCCEEEEHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GEKLAKLDAKVRSDISRKLEMINGAAHEQSSPFRIIASAMVPKEEPCLTKPTPIVLPSTE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEECCCCH
EIIPKQESTTSLRNRNVLFKEQTEEHKKKNSQMEPIVSDSEEEEEKQNCWTSFCGLFGK
HHCCCCCHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA