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The map label for this gene is 54027616

Identifier: 54027616

GI number: 54027616

Start: 5983946

End: 5984806

Strand: Reverse

Name: 54027616

Synonym: nfa56420

Alternate gene names: NA

Gene position: 5984806-5983946 (Counterclockwise)

Preceding gene: 54027618

Following gene: 54027615

Centisome position: 99.4

GC content: 70.27

Gene sequence:

>861_bases
ATGGCACCCGTCTCGCCGACCGTCGCGCGCTGGGAGCTGGTGTTGCGGCTGCGTGAGCTGCGCGAACAGCGCGGCTTCGA
TTCCGCGGGCTTCGCCCGCCGGGTCGGCTTCACCCCGGCCAACTGGTCGCACGTGGAGAACGGCAGGCGAGTGCTGACCG
CACGGACGATCGGCCCGGTGCTCGACGTGCTGGAGGTGCCCGACGACGAACGCGCGGAACTGCTGGCGCTGTTGCAGGCG
GGCAAGCAGCGCGGCTGGTGGAGTCGGTCCTCGGCGCTGATCGGCCCGGAGCTGCAGCGGTTGTACGGGATGGAGTACGG
CGCGCAGAGCATCCGCAGCTACGACAGCCTGATCGTGCCGGGCCTGTTGCAGACCGAGGACTACGCGCGTGCCCTGATCA
GCGCGGACGTGATGATCCGTCCGGTGCAGGTCGACCAGCTCGTCGCGATCCGCCTGCGCCGCCAGCAGCGGCTGCGCGGA
CCCGACCGCGTGGAACTCACCGCGATCGTCGGTGAGGCCACCCTGCGGCAGCAGACCGGCGGCCCGCAGGTGCTGCGCGG
GCAGCTCGAGCATCTGGCCCGGCTCGTCGACGAACTCGACACGCTGGAGGTGCGGGTCATCCCGTTCACGGCGACGGCGG
GCGCGATCCTGGGCGGGTCCAGCTTCCATCTGCTCGACTTCGCAAGCGAGCAGCTACCGACGTTCGGTTGGGCCGAGAGC
GCCGTGTTCGGCGGCCCGGTGGAAGATCCCGAGCTGGTGCGCGATCTCGGCTTCGCCTATCTGCGCGCCCTCGACCAGGC
ACTCTCTCGCGCCGACTCCGCAGCGCTGATCAGGCGTTACGCTTCCGGAGTAGACTCCTGA

Upstream 100 bases:

>100_bases
CTTTCGGGTGTAACCAACCGCTGTCTCGACAGTAGACCCGGGCAACTGCGCTGACAATAGTCACCGCCGATGCGGTGGTC
ACGAAGTAGCATCGCCTGGC

Downstream 100 bases:

>100_bases
TCATGGCCACCACCGCGGGGGCCCGGTCGGGTGACACCGGCTGGTTCACCTCGAGCCGTTCCAACAACGGCAACCAGTGC
GTCGAGGTCCGCTTCGACGG

Product: putative DNA-binding protein

Products: NA

Alternate protein names: Helix-Turn-Helix Domain-Containing Protein; Xre Family xin-Antitoxin System Antitoxin Component; Helix-Turn-Helix Domain Protein; Transcriptional Regulator XRE Family; Transcriptional Regulator; Transcriptional Regulatory Protein; Regulatory Protein; Helix-Turn-Helix Protein

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MAPVSPTVARWELVLRLRELREQRGFDSAGFARRVGFTPANWSHVENGRRVLTARTIGPVLDVLEVPDDERAELLALLQA
GKQRGWWSRSSALIGPELQRLYGMEYGAQSIRSYDSLIVPGLLQTEDYARALISADVMIRPVQVDQLVAIRLRRQQRLRG
PDRVELTAIVGEATLRQQTGGPQVLRGQLEHLARLVDELDTLEVRVIPFTATAGAILGGSSFHLLDFASEQLPTFGWAES
AVFGGPVEDPELVRDLGFAYLRALDQALSRADSAALIRRYASGVDS

Sequences:

>Translated_286_residues
MAPVSPTVARWELVLRLRELREQRGFDSAGFARRVGFTPANWSHVENGRRVLTARTIGPVLDVLEVPDDERAELLALLQA
GKQRGWWSRSSALIGPELQRLYGMEYGAQSIRSYDSLIVPGLLQTEDYARALISADVMIRPVQVDQLVAIRLRRQQRLRG
PDRVELTAIVGEATLRQQTGGPQVLRGQLEHLARLVDELDTLEVRVIPFTATAGAILGGSSFHLLDFASEQLPTFGWAES
AVFGGPVEDPELVRDLGFAYLRALDQALSRADSAALIRRYASGVDS
>Mature_285_residues
APVSPTVARWELVLRLRELREQRGFDSAGFARRVGFTPANWSHVENGRRVLTARTIGPVLDVLEVPDDERAELLALLQAG
KQRGWWSRSSALIGPELQRLYGMEYGAQSIRSYDSLIVPGLLQTEDYARALISADVMIRPVQVDQLVAIRLRRQQRLRGP
DRVELTAIVGEATLRQQTGGPQVLRGQLEHLARLVDELDTLEVRVIPFTATAGAILGGSSFHLLDFASEQLPTFGWAESA
VFGGPVEDPELVRDLGFAYLRALDQALSRADSAALIRRYASGVDS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31622; Mature: 31491

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPVSPTVARWELVLRLRELREQRGFDSAGFARRVGFTPANWSHVENGRRVLTARTIGPV
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCHHHCCCCEEEEHHHHHHH
LDVLEVPDDERAELLALLQAGKQRGWWSRSSALIGPELQRLYGMEYGAQSIRSYDSLIVP
HHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
GLLQTEDYARALISADVMIRPVQVDQLVAIRLRRQQRLRGPDRVELTAIVGEATLRQQTG
CHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHCCC
GPQVLRGQLEHLARLVDELDTLEVRVIPFTATAGAILGGSSFHLLDFASEQLPTFGWAES
CHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHCCCCCEEHHHHHHHHCCCCCCCCC
AVFGGPVEDPELVRDLGFAYLRALDQALSRADSAALIRRYASGVDS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
APVSPTVARWELVLRLRELREQRGFDSAGFARRVGFTPANWSHVENGRRVLTARTIGPV
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCHHHCCCCEEEEHHHHHHH
LDVLEVPDDERAELLALLQAGKQRGWWSRSSALIGPELQRLYGMEYGAQSIRSYDSLIVP
HHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
GLLQTEDYARALISADVMIRPVQVDQLVAIRLRRQQRLRGPDRVELTAIVGEATLRQQTG
CHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHCCC
GPQVLRGQLEHLARLVDELDTLEVRVIPFTATAGAILGGSSFHLLDFASEQLPTFGWAES
CHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHCCCCCEEHHHHHHHHCCCCCCCCC
AVFGGPVEDPELVRDLGFAYLRALDQALSRADSAALIRRYASGVDS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA