Click here to switch to the map view.

The map label for this gene is 54027309

Identifier: 54027309

GI number: 54027309

Start: 5640802

End: 5641602

Strand: Reverse

Name: 54027309

Synonym: nfa53350

Alternate gene names: NA

Gene position: 5641602-5640802 (Counterclockwise)

Preceding gene: 54027310

Following gene: 54027308

Centisome position: 93.7

GC content: 66.04

Gene sequence:

>801_bases
ATGGGCGTGTTGGCCGCGGAACGGATCAAACTGACCTCGACCAGGTCGCCCTGGTGGTGCACGGCGTTGACGGTCGTGTT
CGCCCTCGGCATCACGGCGTTGTTCGCCCTGCTGCTGAACGTCTCCATGAGCGCCTACCGGGAGGACCCGTCGCTCGGTC
CCGAGCCGCCGTACGCCGAGAACGCGATGGCGGGCCTCGGCATCACCGGCGTCGCCTTCATTCCCGGCTTCGGCTACATC
CTGATCATGATCCTGGCGGCGCTCGCGGTCACCAGCGAATACCGCTTCGGGACCATGAAAGCCACCTTCCTCGCCGTGCC
CAATCGCACGTCGGTGCTGGTCACCAAGGCGGCGATGATCGCGGTGGGCGCGGCCGTGCTCAGCGCGGTGCTCACCCTGC
TGAGCTTCTTCATCCTGCAGGTGATCACCACCGACGACGTGGGCGCCAAGCTGAGCCTCAGCGAGGGTGACACCAAGATC
TTCTACGCCGTCCCGATCTTCGTCGCCCTGGTGGTCTTCCTGGCCGTGGGTGTCGGGGCGCTGGTGCGCCAGTCGGCGGG
TGCCATCTCGCTGCTGATCGTCTGGCCCGTGCTGATCGAGCCGATCATCGGCGCGTTCGGCAAGTACGGACGTAATATTC
AAGTGTTCCTGCCGTTCCAGAACGCGAACCGCTTTCTCGGCCTCGACGACAACAGCCTGCCGTGGCACTGGGGAGCCTGG
CCCGCGCTGCTGTACTTCGCGGCGTTCGTCGCGATCGTGTTCGCCGCGGCGCTGGTCGTGGTGAACAAGCGGGACGCGTG
A

Upstream 100 bases:

>100_bases
GGATGACCGGCGGCGCCGTGCAGTACCACGGCGAGGGCGCCGAGGCGGTGGGCGTGCCCGGACCGGGTGGCCCGTACACA
GCGATGGGAGGTGCGCTCTG

Downstream 100 bases:

>100_bases
TGAAGCCACCCGAGTAGCGCCCTCGCCGCTCGGGTTCCGCGGTGACGACCTTGTCGGGAGGTACGCACCGCGCAGGCACG
ATCCGTCACTGCCCGGCGGT

Product: putative ABC transporter membrane protein

Products: NA

Alternate protein names: ABC Transporter Permease Protein; ABC Transporter Permease; ABC Transporter; ABC Transporter Integral Membrane Subunit; Integral Membrane Protein

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MGVLAAERIKLTSTRSPWWCTALTVVFALGITALFALLLNVSMSAYREDPSLGPEPPYAENAMAGLGITGVAFIPGFGYI
LIMILAALAVTSEYRFGTMKATFLAVPNRTSVLVTKAAMIAVGAAVLSAVLTLLSFFILQVITTDDVGAKLSLSEGDTKI
FYAVPIFVALVVFLAVGVGALVRQSAGAISLLIVWPVLIEPIIGAFGKYGRNIQVFLPFQNANRFLGLDDNSLPWHWGAW
PALLYFAAFVAIVFAAALVVVNKRDA

Sequences:

>Translated_266_residues
MGVLAAERIKLTSTRSPWWCTALTVVFALGITALFALLLNVSMSAYREDPSLGPEPPYAENAMAGLGITGVAFIPGFGYI
LIMILAALAVTSEYRFGTMKATFLAVPNRTSVLVTKAAMIAVGAAVLSAVLTLLSFFILQVITTDDVGAKLSLSEGDTKI
FYAVPIFVALVVFLAVGVGALVRQSAGAISLLIVWPVLIEPIIGAFGKYGRNIQVFLPFQNANRFLGLDDNSLPWHWGAW
PALLYFAAFVAIVFAAALVVVNKRDA
>Mature_265_residues
GVLAAERIKLTSTRSPWWCTALTVVFALGITALFALLLNVSMSAYREDPSLGPEPPYAENAMAGLGITGVAFIPGFGYIL
IMILAALAVTSEYRFGTMKATFLAVPNRTSVLVTKAAMIAVGAAVLSAVLTLLSFFILQVITTDDVGAKLSLSEGDTKIF
YAVPIFVALVVFLAVGVGALVRQSAGAISLLIVWPVLIEPIIGAFGKYGRNIQVFLPFQNANRFLGLDDNSLPWHWGAWP
ALLYFAAFVAIVFAAALVVVNKRDA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28360; Mature: 28229

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVLAAERIKLTSTRSPWWCTALTVVFALGITALFALLLNVSMSAYREDPSLGPEPPYAE
CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
NAMAGLGITGVAFIPGFGYILIMILAALAVTSEYRFGTMKATFLAVPNRTSVLVTKAAMI
CHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHH
AVGAAVLSAVLTLLSFFILQVITTDDVGAKLSLSEGDTKIFYAVPIFVALVVFLAVGVGA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEHHHHHHHHHHHHHHHHHH
LVRQSAGAISLLIVWPVLIEPIIGAFGKYGRNIQVFLPFQNANRFLGLDDNSLPWHWGAW
HHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEECCCCCCCCCCCCHH
PALLYFAAFVAIVFAAALVVVNKRDA
HHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
GVLAAERIKLTSTRSPWWCTALTVVFALGITALFALLLNVSMSAYREDPSLGPEPPYAE
CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
NAMAGLGITGVAFIPGFGYILIMILAALAVTSEYRFGTMKATFLAVPNRTSVLVTKAAMI
CHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHH
AVGAAVLSAVLTLLSFFILQVITTDDVGAKLSLSEGDTKIFYAVPIFVALVVFLAVGVGA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEHHHHHHHHHHHHHHHHHH
LVRQSAGAISLLIVWPVLIEPIIGAFGKYGRNIQVFLPFQNANRFLGLDDNSLPWHWGAW
HHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEECCCCCCCCCCCCHH
PALLYFAAFVAIVFAAALVVVNKRDA
HHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA