| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is accA1 [H]
Identifier: 54027303
GI number: 54027303
Start: 5631181
End: 5633193
Strand: Reverse
Name: accA1 [H]
Synonym: nfa53290
Alternate gene names: 54027303
Gene position: 5633193-5631181 (Counterclockwise)
Preceding gene: 54027304
Following gene: 54027302
Centisome position: 93.56
GC content: 72.58
Gene sequence:
>2013_bases GTGAGGCACGCGATGACGATTTCCACTGTGCTGGTCGCGAATCGAGGCGAGATCGCCCGGCGCGTGTTCGCCACCTGCCG CCGGATGGGACTGGGCACCGTCGCGGTGTACTCCGACGCCGATGCCGCCGCACCCCATGTGCGGGAGGCCGACGCGGCGG TCCGGCTGCCGGGCAACACCCCGGCCGAGACCTATCTGCGCGGGGAGCTGATCATCGAGGCGGCGCTCGCCGCGGGCGCC GACGCGGTGCACCCCGGCTACGGCTTCCTCTCCGAGAACGCCGAGTTCGCCCGCGCCGTGCTGGACGCCGGGCTGGTGTG GGTCGGGCCGCCGGTCGCCGCGATCGAGGAGATGGGCTCGAAGGTCGCCTCGAAGAAGCTGATGGACGCCGCGGGTGTGC CGGTGTTGGCCGAACTCGATCCGGCCGAGGTCACCGAGGCGCATCTGCCGGTGCTGATCAAGGCCTCCGCGGGCGGCGGT GGCCGCGGCATGCGGGTGGTGCGCGAGCTGGCCGATCTCGAACCGCAGATCGCCGCCGCCCGCCGGGAGGCCGAATCCGC CTTCGGCGACCCGACCGTGTTCTGCGAGCGCTACCTCGAGACCGGCCGCCACATCGAGGTGCAGGTGCTCGCCGACACGC ACGGCACCATCTGGGCCGTCGGCGAGCGGGAATGCTCCATCCAGCGGCGGCACCAGAAGGTCGTCGAGGAGGCGCCCTCC CCACTGGTCGAACGCATCGACGGCATGCGGGAGCGGCTGTTCGACGCCGCCCGGCTGGCCGCGGGCGCGATCTCCTACAC CGGCGCGGGCACCGTGGAATTCCTGGCCGACGACGCGGGCGAGTTCTACTTCCTGGAGATGAACACCCGGCTGCAGGTGG AACATCCGGTCACCGAGTGCACCACCGGGTTGGACCTGGTGCGGCTGCAACTCGAGATCGCCGCGGGCGCGGCCCTGCCC GCCCGGCCGCCCGCGCTGCGCGGACATTCGATCGAGGTGCGCCTCTACGCCGAGGACCCGGCCCACGAGTGGCAGCCGCA GAGCGGCACCGTGCACCGGGTCGACATTCCGCTGGTGCGCACCGAATTCGATCTGCTCGACCGGGCCGGCGTGCGGCTGG ACACCGGTGTGGTGGACGGTTCGGTGGTCGGCGTGCACTACGACCCGATGCTGTCGAAGGTGATCTCCTACGCCGAGACC CGCGCCGAGGCCGCCCGCCTGCTGGCCTCGGCGTTGCAGCGAGCCCGCATCCACGGTCTGGTCACCAACCGGGACCTGCT GGTCCGGGTGCTGCGCCACCCGGCCTTCCTCGCCGGTGACACCGACACGGCATTCTTCGCCACCCACGGCCTGGACACCC TGTCGGCACCGCTGGTGAGCGCGGCCGACGAGCGGCTGTCCATCGTGGCCGCGGCCCTCGCCGACGCCGCCGCCAACCGG GCCGCCGCCCGGGTCGGCGGCGGGTTGCCCAGCGGCTGGCGCAACCTGCCCTCGCAGTCGCAGCGCAAGTCCTACGAGAG CCGGGTCAGTGGCGTGCACGACGTCGACTATCGGTTCACCCGTTCCGGCGTGCTGGTCGACGGGCACGACGGTCTCGAAC TGGTCGAGGCCGGCCCCGAGCGGGTCGTGCTGGCGGTGCCGGGCGAGCGCGGCCCGGTGCGGCGGGTGTTCGACGTCGCC CGCTACGGCGATCTGGTGTGTGTCGACTCGCCGCTGGGTCCGGTGAGCGTGCGCAGGCTGCCGCGCTTCAGCGATCCGGC CGACCAGGTGGCCACCGGCTCGCTGCTCGCCCCGATGCCGGGCAGCGTCATCCGGCTCGGCGCCGCCGTCGGTGACCGCG TGGACGCGGGTCAGCCGGTGCTGTGGCTGGAGGCGATGAAGATGGAGCACACCATCGCCGCGCCCGCCGCCGGTGTGCTC AGCGCGGTGAACGTCGCGGTCGGCCAGCAGGTCGACATCGGCACGGTATTGGCCGTCGTGGAACCCGCGGCCGACGACAC AGAGAAGGACTGA
Upstream 100 bases:
>100_bases TGATCGATCCCCGCGATACCCGCACGGTGTTGGGCATGGCGCTCTCGGCCATCCACAACGCCCCGATCAAGGGCGCCGAG GGCTTCGGCGTCTTCCGGAT
Downstream 100 bases:
>100_bases GCCATGAGCTTCATCGAGAGCGACGAGCGCAAGCAGCTGCGGGCCGCGGTGGCCGCGCTGGCCGCCAAGTACACCTATCG CGACTACGTGCTGCCCAAGG
Product: putative acetyl/propionyl-CoA carboxylase subunit alpha
Products: NA
Alternate protein names: Biotin carboxylase; Biotin carboxyl carrier protein; BCCP [H]
Number of amino acids: Translated: 670; Mature: 670
Protein sequence:
>670_residues MRHAMTISTVLVANRGEIARRVFATCRRMGLGTVAVYSDADAAAPHVREADAAVRLPGNTPAETYLRGELIIEAALAAGA DAVHPGYGFLSENAEFARAVLDAGLVWVGPPVAAIEEMGSKVASKKLMDAAGVPVLAELDPAEVTEAHLPVLIKASAGGG GRGMRVVRELADLEPQIAAARREAESAFGDPTVFCERYLETGRHIEVQVLADTHGTIWAVGERECSIQRRHQKVVEEAPS PLVERIDGMRERLFDAARLAAGAISYTGAGTVEFLADDAGEFYFLEMNTRLQVEHPVTECTTGLDLVRLQLEIAAGAALP ARPPALRGHSIEVRLYAEDPAHEWQPQSGTVHRVDIPLVRTEFDLLDRAGVRLDTGVVDGSVVGVHYDPMLSKVISYAET RAEAARLLASALQRARIHGLVTNRDLLVRVLRHPAFLAGDTDTAFFATHGLDTLSAPLVSAADERLSIVAAALADAAANR AAARVGGGLPSGWRNLPSQSQRKSYESRVSGVHDVDYRFTRSGVLVDGHDGLELVEAGPERVVLAVPGERGPVRRVFDVA RYGDLVCVDSPLGPVSVRRLPRFSDPADQVATGSLLAPMPGSVIRLGAAVGDRVDAGQPVLWLEAMKMEHTIAAPAAGVL SAVNVAVGQQVDIGTVLAVVEPAADDTEKD
Sequences:
>Translated_670_residues MRHAMTISTVLVANRGEIARRVFATCRRMGLGTVAVYSDADAAAPHVREADAAVRLPGNTPAETYLRGELIIEAALAAGA DAVHPGYGFLSENAEFARAVLDAGLVWVGPPVAAIEEMGSKVASKKLMDAAGVPVLAELDPAEVTEAHLPVLIKASAGGG GRGMRVVRELADLEPQIAAARREAESAFGDPTVFCERYLETGRHIEVQVLADTHGTIWAVGERECSIQRRHQKVVEEAPS PLVERIDGMRERLFDAARLAAGAISYTGAGTVEFLADDAGEFYFLEMNTRLQVEHPVTECTTGLDLVRLQLEIAAGAALP ARPPALRGHSIEVRLYAEDPAHEWQPQSGTVHRVDIPLVRTEFDLLDRAGVRLDTGVVDGSVVGVHYDPMLSKVISYAET RAEAARLLASALQRARIHGLVTNRDLLVRVLRHPAFLAGDTDTAFFATHGLDTLSAPLVSAADERLSIVAAALADAAANR AAARVGGGLPSGWRNLPSQSQRKSYESRVSGVHDVDYRFTRSGVLVDGHDGLELVEAGPERVVLAVPGERGPVRRVFDVA RYGDLVCVDSPLGPVSVRRLPRFSDPADQVATGSLLAPMPGSVIRLGAAVGDRVDAGQPVLWLEAMKMEHTIAAPAAGVL SAVNVAVGQQVDIGTVLAVVEPAADDTEKD >Mature_670_residues MRHAMTISTVLVANRGEIARRVFATCRRMGLGTVAVYSDADAAAPHVREADAAVRLPGNTPAETYLRGELIIEAALAAGA DAVHPGYGFLSENAEFARAVLDAGLVWVGPPVAAIEEMGSKVASKKLMDAAGVPVLAELDPAEVTEAHLPVLIKASAGGG GRGMRVVRELADLEPQIAAARREAESAFGDPTVFCERYLETGRHIEVQVLADTHGTIWAVGERECSIQRRHQKVVEEAPS PLVERIDGMRERLFDAARLAAGAISYTGAGTVEFLADDAGEFYFLEMNTRLQVEHPVTECTTGLDLVRLQLEIAAGAALP ARPPALRGHSIEVRLYAEDPAHEWQPQSGTVHRVDIPLVRTEFDLLDRAGVRLDTGVVDGSVVGVHYDPMLSKVISYAET RAEAARLLASALQRARIHGLVTNRDLLVRVLRHPAFLAGDTDTAFFATHGLDTLSAPLVSAADERLSIVAAALADAAANR AAARVGGGLPSGWRNLPSQSQRKSYESRVSGVHDVDYRFTRSGVLVDGHDGLELVEAGPERVVLAVPGERGPVRRVFDVA RYGDLVCVDSPLGPVSVRRLPRFSDPADQVATGSLLAPMPGSVIRLGAAVGDRVDAGQPVLWLEAMKMEHTIAAPAAGVL SAVNVAVGQQVDIGTVLAVVEPAADDTEKD
Specific function: This protein carries two functions:biotin carboxyl carrier protein and biotin carboxyltransferase [H]
COG id: COG0439
COG function: function code I; Biotin carboxylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 biotinyl-binding domain [H]
Homologues:
Organism=Homo sapiens, GI116805327, Length=696, Percent_Identity=37.3563218390805, Blast_Score=419, Evalue=1e-117, Organism=Homo sapiens, GI189095269, Length=690, Percent_Identity=36.5217391304348, Blast_Score=366, Evalue=1e-101, Organism=Homo sapiens, GI65506442, Length=685, Percent_Identity=36.6423357664234, Blast_Score=365, Evalue=1e-101, Organism=Homo sapiens, GI295821183, Length=671, Percent_Identity=37.5558867362146, Blast_Score=360, Evalue=2e-99, Organism=Homo sapiens, GI106049528, Length=456, Percent_Identity=43.421052631579, Blast_Score=319, Evalue=7e-87, Organism=Homo sapiens, GI106049295, Length=456, Percent_Identity=43.421052631579, Blast_Score=319, Evalue=7e-87, Organism=Homo sapiens, GI106049292, Length=456, Percent_Identity=43.421052631579, Blast_Score=319, Evalue=7e-87, Organism=Homo sapiens, GI38679971, Length=745, Percent_Identity=28.5906040268456, Blast_Score=218, Evalue=1e-56, Organism=Homo sapiens, GI38679974, Length=745, Percent_Identity=28.5906040268456, Blast_Score=218, Evalue=1e-56, Organism=Homo sapiens, GI38679960, Length=745, Percent_Identity=28.5906040268456, Blast_Score=217, Evalue=2e-56, Organism=Homo sapiens, GI38679977, Length=745, Percent_Identity=28.5906040268456, Blast_Score=217, Evalue=3e-56, Organism=Homo sapiens, GI38679967, Length=745, Percent_Identity=28.5906040268456, Blast_Score=217, Evalue=3e-56, Organism=Homo sapiens, GI134142062, Length=548, Percent_Identity=30.2919708029197, Blast_Score=203, Evalue=5e-52, Organism=Escherichia coli, GI1789654, Length=452, Percent_Identity=43.141592920354, Blast_Score=313, Evalue=3e-86, Organism=Caenorhabditis elegans, GI71987519, Length=676, Percent_Identity=40.9763313609467, Blast_Score=429, Evalue=1e-120, Organism=Caenorhabditis elegans, GI17567343, Length=693, Percent_Identity=36.7965367965368, Blast_Score=366, Evalue=1e-101, Organism=Caenorhabditis elegans, GI17562816, Length=461, Percent_Identity=42.7331887201735, Blast_Score=312, Evalue=3e-85, Organism=Caenorhabditis elegans, GI133931226, Length=555, Percent_Identity=28.8288288288288, Blast_Score=204, Evalue=1e-52, Organism=Caenorhabditis elegans, GI71997168, Length=563, Percent_Identity=27.3534635879218, Blast_Score=178, Evalue=8e-45, Organism=Caenorhabditis elegans, GI71997163, Length=517, Percent_Identity=27.6595744680851, Blast_Score=173, Evalue=3e-43, Organism=Saccharomyces cerevisiae, GI6319685, Length=506, Percent_Identity=38.9328063241107, Blast_Score=331, Evalue=3e-91, Organism=Saccharomyces cerevisiae, GI6319695, Length=502, Percent_Identity=39.8406374501992, Blast_Score=295, Evalue=1e-80, Organism=Saccharomyces cerevisiae, GI6321376, Length=502, Percent_Identity=40.0398406374502, Blast_Score=290, Evalue=4e-79, Organism=Saccharomyces cerevisiae, GI6324343, Length=755, Percent_Identity=26.6225165562914, Blast_Score=202, Evalue=2e-52, Organism=Saccharomyces cerevisiae, GI6323863, Length=696, Percent_Identity=26.7241379310345, Blast_Score=200, Evalue=6e-52, Organism=Drosophila melanogaster, GI24651757, Length=692, Percent_Identity=38.0057803468208, Blast_Score=404, Evalue=1e-112, Organism=Drosophila melanogaster, GI24651759, Length=653, Percent_Identity=37.0597243491577, Blast_Score=363, Evalue=1e-100, Organism=Drosophila melanogaster, GI24652212, Length=485, Percent_Identity=42.0618556701031, Blast_Score=322, Evalue=5e-88, Organism=Drosophila melanogaster, GI24652210, Length=485, Percent_Identity=42.0618556701031, Blast_Score=322, Evalue=5e-88, Organism=Drosophila melanogaster, GI24652214, Length=485, Percent_Identity=42.0618556701031, Blast_Score=322, Evalue=5e-88, Organism=Drosophila melanogaster, GI19921944, Length=485, Percent_Identity=42.0618556701031, Blast_Score=322, Evalue=5e-88, Organism=Drosophila melanogaster, GI24652216, Length=485, Percent_Identity=42.0618556701031, Blast_Score=322, Evalue=5e-88, Organism=Drosophila melanogaster, GI281363050, Length=485, Percent_Identity=42.0618556701031, Blast_Score=322, Evalue=6e-88, Organism=Drosophila melanogaster, GI24652224, Length=485, Percent_Identity=42.0618556701031, Blast_Score=322, Evalue=6e-88, Organism=Drosophila melanogaster, GI24652222, Length=485, Percent_Identity=42.0618556701031, Blast_Score=322, Evalue=6e-88, Organism=Drosophila melanogaster, GI24652220, Length=485, Percent_Identity=42.0618556701031, Blast_Score=322, Evalue=6e-88, Organism=Drosophila melanogaster, GI24652218, Length=485, Percent_Identity=42.0618556701031, Blast_Score=322, Evalue=6e-88, Organism=Drosophila melanogaster, GI161076409, Length=741, Percent_Identity=27.3954116059379, Blast_Score=210, Evalue=3e-54, Organism=Drosophila melanogaster, GI24586458, Length=741, Percent_Identity=27.3954116059379, Blast_Score=209, Evalue=4e-54, Organism=Drosophila melanogaster, GI161076407, Length=741, Percent_Identity=27.3954116059379, Blast_Score=209, Evalue=5e-54, Organism=Drosophila melanogaster, GI24586460, Length=741, Percent_Identity=27.3954116059379, Blast_Score=209, Evalue=5e-54,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011761 - InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR001882 - InterPro: IPR011764 - InterPro: IPR005482 - InterPro: IPR000089 - InterPro: IPR005479 - InterPro: IPR005481 - InterPro: IPR013817 - InterPro: IPR016185 - InterPro: IPR011054 - InterPro: IPR011053 [H]
Pfam domain/function: PF02785 Biotin_carb_C; PF00364 Biotin_lipoyl; PF00289 CPSase_L_chain; PF02786 CPSase_L_D2 [H]
EC number: =6.3.4.14 [H]
Molecular weight: Translated: 71225; Mature: 71225
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: PS50975 ATP_GRASP ; PS00867 CPSASE_2 ; PS50979 BC ; PS50968 BIOTINYL_LIPOYL ; PS00188 BIOTIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRHAMTISTVLVANRGEIARRVFATCRRMGLGTVAVYSDADAAAPHVREADAAVRLPGNT CCCEEEEEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEECCCCC PAETYLRGELIIEAALAAGADAVHPGYGFLSENAEFARAVLDAGLVWVGPPVAAIEEMGS CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHHH KVASKKLMDAAGVPVLAELDPAEVTEAHLPVLIKASAGGGGRGMRVVRELADLEPQIAAA HHHHHHHHHHCCCCEEECCCHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHH RREAESAFGDPTVFCERYLETGRHIEVQVLADTHGTIWAVGERECSIQRRHQKVVEEAPS HHHHHHHCCCHHHHHHHHHHCCCEEEEEEEECCCCCEEEECCCHHHHHHHHHHHHHHCCC PLVERIDGMRERLFDAARLAAGAISYTGAGTVEFLADDAGEFYFLEMNTRLQVEHPVTEC HHHHHHHHHHHHHHHHHHHHHCCEEECCCCEEEEEECCCCCEEEEEECCEEEECCCHHHH TTGLDLVRLQLEIAAGAALPARPPALRGHSIEVRLYAEDPAHEWQPQSGTVHRVDIPLVR HCCCEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCEEE TEFDLLDRAGVRLDTGVVDGSVVGVHYDPMLSKVISYAETRAEAARLLASALQRARIHGL HHHHHHHHCCCEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE VTNRDLLVRVLRHPAFLAGDTDTAFFATHGLDTLSAPLVSAADERLSIVAAALADAAANR ECCHHHHHHHHHCCCEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAARVGGGLPSGWRNLPSQSQRKSYESRVSGVHDVDYRFTRSGVLVDGHDGLELVEAGPE HHHHHCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCCEEEECCCEEEECCCCCHHEECCCC RVVLAVPGERGPVRRVFDVARYGDLVCVDSPLGPVSVRRLPRFSDPADQVATGSLLAPMP EEEEECCCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHCCCCCCCHHHHHCCCEECCCC GSVIRLGAAVGDRVDAGQPVLWLEAMKMEHTIAAPAAGVLSAVNVAVGQQVDIGTVLAVV CHHEEEHHHHCCCCCCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEE EPAADDTEKD ECCCCCCCCC >Mature Secondary Structure MRHAMTISTVLVANRGEIARRVFATCRRMGLGTVAVYSDADAAAPHVREADAAVRLPGNT CCCEEEEEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEECCCCC PAETYLRGELIIEAALAAGADAVHPGYGFLSENAEFARAVLDAGLVWVGPPVAAIEEMGS CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHHH KVASKKLMDAAGVPVLAELDPAEVTEAHLPVLIKASAGGGGRGMRVVRELADLEPQIAAA HHHHHHHHHHCCCCEEECCCHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHH RREAESAFGDPTVFCERYLETGRHIEVQVLADTHGTIWAVGERECSIQRRHQKVVEEAPS HHHHHHHCCCHHHHHHHHHHCCCEEEEEEEECCCCCEEEECCCHHHHHHHHHHHHHHCCC PLVERIDGMRERLFDAARLAAGAISYTGAGTVEFLADDAGEFYFLEMNTRLQVEHPVTEC HHHHHHHHHHHHHHHHHHHHHCCEEECCCCEEEEEECCCCCEEEEEECCEEEECCCHHHH TTGLDLVRLQLEIAAGAALPARPPALRGHSIEVRLYAEDPAHEWQPQSGTVHRVDIPLVR HCCCEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCEEE TEFDLLDRAGVRLDTGVVDGSVVGVHYDPMLSKVISYAETRAEAARLLASALQRARIHGL HHHHHHHHCCCEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE VTNRDLLVRVLRHPAFLAGDTDTAFFATHGLDTLSAPLVSAADERLSIVAAALADAAANR ECCHHHHHHHHHCCCEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAARVGGGLPSGWRNLPSQSQRKSYESRVSGVHDVDYRFTRSGVLVDGHDGLELVEAGPE HHHHHCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCCEEEECCCEEEECCCCCHHEECCCC RVVLAVPGERGPVRRVFDVARYGDLVCVDSPLGPVSVRRLPRFSDPADQVATGSLLAPMP EEEEECCCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHCCCCCCCHHHHHCCCEECCCC GSVIRLGAAVGDRVDAGQPVLWLEAMKMEHTIAAPAAGVLSAVNVAVGQQVDIGTVLAVV CHHEEEHHHHCCCCCCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEE EPAADDTEKD ECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]