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The map label for this gene is 54027004

Identifier: 54027004

GI number: 54027004

Start: 5242760

End: 5243374

Strand: Reverse

Name: 54027004

Synonym: nfa50300

Alternate gene names: NA

Gene position: 5243374-5242760 (Counterclockwise)

Preceding gene: 54027007

Following gene: 54027003

Centisome position: 87.08

GC content: 72.03

Gene sequence:

>615_bases
ATGCCCCGTCCTCGCTCCCTGACCGGCGCCGATCTCGTGCGCGCCGCCCTCGCGGTGATCGATCGCGACGGTTTGTCGGC
GCTCACGATGCGCGCCGTCGCCAAGGAACTCGGCATGGCGACGATGGCGCTGTACCGCTACGTGCCCGATCGCGACGGGC
TCGAACGGTTGATCGTGGATAGCCTGTTCGAGTCCGTCGACGTGCGCGTGCCCGCGGACACGCCGTGGCGGGAACGGGTG
ATCCTGCTGCTCGACCGGTTACGGGCGGCCGTCGCCGCGCACCCGGAGACGGTGCCGCTGCTGCTGGCGCACCGGCAGTC
CTCGCCGACCAGCCTGCGCTGGATGGAGGCGATGCTCGGGGTGCTCACCGAGGCGGGCTTCGACGGCGCCGAGCGGGTGA
TCGCCCAGCGCACCCTGGTGGCGTTCCTGCTCGGCTTCCTGCAGAACGAGCACTACGCCTCGGTGCGCGGGCGCGGTACC
GCCGTGATCGCCGAACTCCCGGAGGCGGACTATCCGCACCTCACCGCGACCGCCCGGACGGCACTGCGGATCGCGCCGGA
CGAGGAGTTCCGCGGCGGCGCGCAGATCGTGCTGCGCGGATTGCGGCCGGACTGA

Upstream 100 bases:

>100_bases
TGCGCCCGGGCACGGTGCCGAGCAGGGACATGGCGACTCCTCGTAGGTGTACTTCGTACGCTTACGACCAGTATGCGCGT
ATCTTGTACGCTGTCAATCC

Downstream 100 bases:

>100_bases
CGGCCTCCGGAACGCTTTGTGTACGGCGGCGTTCTCCATGGCGTGTCGGCTCGGCCCGCCCGGCACAATCGGCCCGGAAT
ACGGTGCCGAGCAGGAGGAA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator TetR Family; Regulatory Protein TetR; Transcriptional Regulator TetR Family Protein; Regulatory Protein; TetR-Family Transcriptional Regulator; Transcription Regulator; TetR Family Transcriptional Repressor

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MPRPRSLTGADLVRAALAVIDRDGLSALTMRAVAKELGMATMALYRYVPDRDGLERLIVDSLFESVDVRVPADTPWRERV
ILLLDRLRAAVAAHPETVPLLLAHRQSSPTSLRWMEAMLGVLTEAGFDGAERVIAQRTLVAFLLGFLQNEHYASVRGRGT
AVIAELPEADYPHLTATARTALRIAPDEEFRGGAQIVLRGLRPD

Sequences:

>Translated_204_residues
MPRPRSLTGADLVRAALAVIDRDGLSALTMRAVAKELGMATMALYRYVPDRDGLERLIVDSLFESVDVRVPADTPWRERV
ILLLDRLRAAVAAHPETVPLLLAHRQSSPTSLRWMEAMLGVLTEAGFDGAERVIAQRTLVAFLLGFLQNEHYASVRGRGT
AVIAELPEADYPHLTATARTALRIAPDEEFRGGAQIVLRGLRPD
>Mature_203_residues
PRPRSLTGADLVRAALAVIDRDGLSALTMRAVAKELGMATMALYRYVPDRDGLERLIVDSLFESVDVRVPADTPWRERVI
LLLDRLRAAVAAHPETVPLLLAHRQSSPTSLRWMEAMLGVLTEAGFDGAERVIAQRTLVAFLLGFLQNEHYASVRGRGTA
VIAELPEADYPHLTATARTALRIAPDEEFRGGAQIVLRGLRPD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22430; Mature: 22299

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRPRSLTGADLVRAALAVIDRDGLSALTMRAVAKELGMATMALYRYVPDRDGLERLIVD
CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
SLFESVDVRVPADTPWRERVILLLDRLRAAVAAHPETVPLLLAHRQSSPTSLRWMEAMLG
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHEEECCCCCCHHHHHHHHHH
VLTEAGFDGAERVIAQRTLVAFLLGFLQNEHYASVRGRGTAVIAELPEADYPHLTATART
HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEECCCCCCCCHHHHHHH
ALRIAPDEEFRGGAQIVLRGLRPD
HEECCCCHHHCCCHHHEEECCCCC
>Mature Secondary Structure 
PRPRSLTGADLVRAALAVIDRDGLSALTMRAVAKELGMATMALYRYVPDRDGLERLIVD
CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
SLFESVDVRVPADTPWRERVILLLDRLRAAVAAHPETVPLLLAHRQSSPTSLRWMEAMLG
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHEEECCCCCCHHHHHHHHHH
VLTEAGFDGAERVIAQRTLVAFLLGFLQNEHYASVRGRGTAVIAELPEADYPHLTATART
HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEECCCCCCCCHHHHHHH
ALRIAPDEEFRGGAQIVLRGLRPD
HEECCCCHHHCCCHHHEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA