Definition Nocardia farcinica IFM 10152 chromosome, complete genome.
Accession NC_006361
Length 6,021,225

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The map label for this gene is 54026811

Identifier: 54026811

GI number: 54026811

Start: 5051593

End: 5052468

Strand: Reverse

Name: 54026811

Synonym: nfa48370

Alternate gene names: NA

Gene position: 5052468-5051593 (Counterclockwise)

Preceding gene: 54026812

Following gene: 54026810

Centisome position: 83.91

GC content: 66.67

Gene sequence:

>876_bases
GTGCGCACATCCAGCAATCCGATATTCAAGAACCTCCCGAAGCAAGAGGGCGGTGGCTACGCCAACTTCGGATCGGGCGT
GGCGGGTGCCGGACAGTTCGGGCAGCAGTTCGGTCACCAGTACCCCAACCAGTACGGCCAGTACCAGCAGCAGCCGTACC
AGCAGTCCGCGCCGCCCACCACCACCCGGGCGATGACCATCGACGACGTGGTCACCAAGACCGGCATCACGCTGGGTGTG
CTGGCGATCTCGGCGATCGTCGCCTACGCGCTCACCTCGGCCAACACCGGCCTCGCCCCGCTGTTCGTGATCGTCGGCGG
CCTGGTCGGCCTGGTGCTGGTGCTGGTGGCGACCTTCGCCAACAAGATGGACAACCCGGTCATCGTGCTGTCCTACGCGG
TCGCCGAGGGCCTGTTCCTCGGTGCGCTGTCGTTCATGTTCACCGATGTCAGCTTCGGCGGTGTCGGTGGCAGCGGCCTG
ATCGCCCAGGCGGTGCTGGGCACCTTCGGTGTGTTCGCCGGCATGCTCGTGGTCTACAAGACCGGTGCCATCCGCGTGAC
GCCGCGCTTCACCCGCATGATCGTCGGCGCCACCATCGGCGTCGTGGTGCTGATGCTGGGCAACCTGATCGCGAGCTTCT
TCACCGACGGCGGCTTCGGCCTGCGTGACGGCGGCGCGCTCGCCATCGTGTTCAGCCTGGTCTGCATCGCCATCGCCGCG
TTCAGCTTCCTGCTCGACTTCGACGCCGCCGATCAGCTGATCCGCGCGCAGGCGCCGGAGAAGGCGGCCTGGGGCGTGGC
GCTCGGCCTGACCGTCACCCTGGTGTGGCTGTACGTCGAGATCCTGCGACTGCTGAGCTACTTCCAGAACGACTAG

Upstream 100 bases:

>100_bases
GTGGGAACTCGGCGGCGGAGCCGCACGTTGAACAGAACAAGTTGGAGCTCGAGCGCCAGCTCGATCAGACAGCCGCAACG
ACTCCAGAAAGGCACTCACG

Downstream 100 bases:

>100_bases
GCAGTGTCTCGAAGTAGCGCTGGTGGTGTGGGACTGTTTGGCAGGCTGGGGGTTTGAGATATGGCGAGGTCTCCGGTAGT
TGGTTGATCGACCAAGATTC

Product: hypothetical protein

Products: NA

Alternate protein names: Transmembrane Protein; Permease Of Facilitator Superfamily Protein; Membrane Spanning Protein

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MRTSSNPIFKNLPKQEGGGYANFGSGVAGAGQFGQQFGHQYPNQYGQYQQQPYQQSAPPTTTRAMTIDDVVTKTGITLGV
LAISAIVAYALTSANTGLAPLFVIVGGLVGLVLVLVATFANKMDNPVIVLSYAVAEGLFLGALSFMFTDVSFGGVGGSGL
IAQAVLGTFGVFAGMLVVYKTGAIRVTPRFTRMIVGATIGVVVLMLGNLIASFFTDGGFGLRDGGALAIVFSLVCIAIAA
FSFLLDFDAADQLIRAQAPEKAAWGVALGLTVTLVWLYVEILRLLSYFQND

Sequences:

>Translated_291_residues
MRTSSNPIFKNLPKQEGGGYANFGSGVAGAGQFGQQFGHQYPNQYGQYQQQPYQQSAPPTTTRAMTIDDVVTKTGITLGV
LAISAIVAYALTSANTGLAPLFVIVGGLVGLVLVLVATFANKMDNPVIVLSYAVAEGLFLGALSFMFTDVSFGGVGGSGL
IAQAVLGTFGVFAGMLVVYKTGAIRVTPRFTRMIVGATIGVVVLMLGNLIASFFTDGGFGLRDGGALAIVFSLVCIAIAA
FSFLLDFDAADQLIRAQAPEKAAWGVALGLTVTLVWLYVEILRLLSYFQND
>Mature_291_residues
MRTSSNPIFKNLPKQEGGGYANFGSGVAGAGQFGQQFGHQYPNQYGQYQQQPYQQSAPPTTTRAMTIDDVVTKTGITLGV
LAISAIVAYALTSANTGLAPLFVIVGGLVGLVLVLVATFANKMDNPVIVLSYAVAEGLFLGALSFMFTDVSFGGVGGSGL
IAQAVLGTFGVFAGMLVVYKTGAIRVTPRFTRMIVGATIGVVVLMLGNLIASFFTDGGFGLRDGGALAIVFSLVCIAIAA
FSFLLDFDAADQLIRAQAPEKAAWGVALGLTVTLVWLYVEILRLLSYFQND

Specific function: Unknown

COG id: COG4760

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30506; Mature: 30506

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTSSNPIFKNLPKQEGGGYANFGSGVAGAGQFGQQFGHQYPNQYGQYQQQPYQQSAPPT
CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCC
TTRAMTIDDVVTKTGITLGVLAISAIVAYALTSANTGLAPLFVIVGGLVGLVLVLVATFA
CCCEEEHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
NKMDNPVIVLSYAVAEGLFLGALSFMFTDVSFGGVGGSGLIAQAVLGTFGVFAGMLVVYK
HHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
TGAIRVTPRFTRMIVGATIGVVVLMLGNLIASFFTDGGFGLRDGGALAIVFSLVCIAIAA
CCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
FSFLLDFDAADQLIRAQAPEKAAWGVALGLTVTLVWLYVEILRLLSYFQND
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRTSSNPIFKNLPKQEGGGYANFGSGVAGAGQFGQQFGHQYPNQYGQYQQQPYQQSAPPT
CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCC
TTRAMTIDDVVTKTGITLGVLAISAIVAYALTSANTGLAPLFVIVGGLVGLVLVLVATFA
CCCEEEHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
NKMDNPVIVLSYAVAEGLFLGALSFMFTDVSFGGVGGSGLIAQAVLGTFGVFAGMLVVYK
HHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
TGAIRVTPRFTRMIVGATIGVVVLMLGNLIASFFTDGGFGLRDGGALAIVFSLVCIAIAA
CCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
FSFLLDFDAADQLIRAQAPEKAAWGVALGLTVTLVWLYVEILRLLSYFQND
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA