| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54026811
Identifier: 54026811
GI number: 54026811
Start: 5051593
End: 5052468
Strand: Reverse
Name: 54026811
Synonym: nfa48370
Alternate gene names: NA
Gene position: 5052468-5051593 (Counterclockwise)
Preceding gene: 54026812
Following gene: 54026810
Centisome position: 83.91
GC content: 66.67
Gene sequence:
>876_bases GTGCGCACATCCAGCAATCCGATATTCAAGAACCTCCCGAAGCAAGAGGGCGGTGGCTACGCCAACTTCGGATCGGGCGT GGCGGGTGCCGGACAGTTCGGGCAGCAGTTCGGTCACCAGTACCCCAACCAGTACGGCCAGTACCAGCAGCAGCCGTACC AGCAGTCCGCGCCGCCCACCACCACCCGGGCGATGACCATCGACGACGTGGTCACCAAGACCGGCATCACGCTGGGTGTG CTGGCGATCTCGGCGATCGTCGCCTACGCGCTCACCTCGGCCAACACCGGCCTCGCCCCGCTGTTCGTGATCGTCGGCGG CCTGGTCGGCCTGGTGCTGGTGCTGGTGGCGACCTTCGCCAACAAGATGGACAACCCGGTCATCGTGCTGTCCTACGCGG TCGCCGAGGGCCTGTTCCTCGGTGCGCTGTCGTTCATGTTCACCGATGTCAGCTTCGGCGGTGTCGGTGGCAGCGGCCTG ATCGCCCAGGCGGTGCTGGGCACCTTCGGTGTGTTCGCCGGCATGCTCGTGGTCTACAAGACCGGTGCCATCCGCGTGAC GCCGCGCTTCACCCGCATGATCGTCGGCGCCACCATCGGCGTCGTGGTGCTGATGCTGGGCAACCTGATCGCGAGCTTCT TCACCGACGGCGGCTTCGGCCTGCGTGACGGCGGCGCGCTCGCCATCGTGTTCAGCCTGGTCTGCATCGCCATCGCCGCG TTCAGCTTCCTGCTCGACTTCGACGCCGCCGATCAGCTGATCCGCGCGCAGGCGCCGGAGAAGGCGGCCTGGGGCGTGGC GCTCGGCCTGACCGTCACCCTGGTGTGGCTGTACGTCGAGATCCTGCGACTGCTGAGCTACTTCCAGAACGACTAG
Upstream 100 bases:
>100_bases GTGGGAACTCGGCGGCGGAGCCGCACGTTGAACAGAACAAGTTGGAGCTCGAGCGCCAGCTCGATCAGACAGCCGCAACG ACTCCAGAAAGGCACTCACG
Downstream 100 bases:
>100_bases GCAGTGTCTCGAAGTAGCGCTGGTGGTGTGGGACTGTTTGGCAGGCTGGGGGTTTGAGATATGGCGAGGTCTCCGGTAGT TGGTTGATCGACCAAGATTC
Product: hypothetical protein
Products: NA
Alternate protein names: Transmembrane Protein; Permease Of Facilitator Superfamily Protein; Membrane Spanning Protein
Number of amino acids: Translated: 291; Mature: 291
Protein sequence:
>291_residues MRTSSNPIFKNLPKQEGGGYANFGSGVAGAGQFGQQFGHQYPNQYGQYQQQPYQQSAPPTTTRAMTIDDVVTKTGITLGV LAISAIVAYALTSANTGLAPLFVIVGGLVGLVLVLVATFANKMDNPVIVLSYAVAEGLFLGALSFMFTDVSFGGVGGSGL IAQAVLGTFGVFAGMLVVYKTGAIRVTPRFTRMIVGATIGVVVLMLGNLIASFFTDGGFGLRDGGALAIVFSLVCIAIAA FSFLLDFDAADQLIRAQAPEKAAWGVALGLTVTLVWLYVEILRLLSYFQND
Sequences:
>Translated_291_residues MRTSSNPIFKNLPKQEGGGYANFGSGVAGAGQFGQQFGHQYPNQYGQYQQQPYQQSAPPTTTRAMTIDDVVTKTGITLGV LAISAIVAYALTSANTGLAPLFVIVGGLVGLVLVLVATFANKMDNPVIVLSYAVAEGLFLGALSFMFTDVSFGGVGGSGL IAQAVLGTFGVFAGMLVVYKTGAIRVTPRFTRMIVGATIGVVVLMLGNLIASFFTDGGFGLRDGGALAIVFSLVCIAIAA FSFLLDFDAADQLIRAQAPEKAAWGVALGLTVTLVWLYVEILRLLSYFQND >Mature_291_residues MRTSSNPIFKNLPKQEGGGYANFGSGVAGAGQFGQQFGHQYPNQYGQYQQQPYQQSAPPTTTRAMTIDDVVTKTGITLGV LAISAIVAYALTSANTGLAPLFVIVGGLVGLVLVLVATFANKMDNPVIVLSYAVAEGLFLGALSFMFTDVSFGGVGGSGL IAQAVLGTFGVFAGMLVVYKTGAIRVTPRFTRMIVGATIGVVVLMLGNLIASFFTDGGFGLRDGGALAIVFSLVCIAIAA FSFLLDFDAADQLIRAQAPEKAAWGVALGLTVTLVWLYVEILRLLSYFQND
Specific function: Unknown
COG id: COG4760
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30506; Mature: 30506
Theoretical pI: Translated: 7.33; Mature: 7.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTSSNPIFKNLPKQEGGGYANFGSGVAGAGQFGQQFGHQYPNQYGQYQQQPYQQSAPPT CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCC TTRAMTIDDVVTKTGITLGVLAISAIVAYALTSANTGLAPLFVIVGGLVGLVLVLVATFA CCCEEEHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH NKMDNPVIVLSYAVAEGLFLGALSFMFTDVSFGGVGGSGLIAQAVLGTFGVFAGMLVVYK HHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH TGAIRVTPRFTRMIVGATIGVVVLMLGNLIASFFTDGGFGLRDGGALAIVFSLVCIAIAA CCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH FSFLLDFDAADQLIRAQAPEKAAWGVALGLTVTLVWLYVEILRLLSYFQND HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRTSSNPIFKNLPKQEGGGYANFGSGVAGAGQFGQQFGHQYPNQYGQYQQQPYQQSAPPT CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCC TTRAMTIDDVVTKTGITLGVLAISAIVAYALTSANTGLAPLFVIVGGLVGLVLVLVATFA CCCEEEHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH NKMDNPVIVLSYAVAEGLFLGALSFMFTDVSFGGVGGSGLIAQAVLGTFGVFAGMLVVYK HHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH TGAIRVTPRFTRMIVGATIGVVVLMLGNLIASFFTDGGFGLRDGGALAIVFSLVCIAIAA CCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH FSFLLDFDAADQLIRAQAPEKAAWGVALGLTVTLVWLYVEILRLLSYFQND HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA