| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54026710
Identifier: 54026710
GI number: 54026710
Start: 4946787
End: 4947725
Strand: Reverse
Name: 54026710
Synonym: nfa47360
Alternate gene names: NA
Gene position: 4947725-4946787 (Counterclockwise)
Preceding gene: 54026711
Following gene: 54026702
Centisome position: 82.17
GC content: 72.2
Gene sequence:
>939_bases ATGAAAATCCAACACCGCGAGTCCGCCTGGGCGAGCACGAATACCTGGGACAACCCCGAATGGGCGGTCGAGGAGCTGAT CGCCGCCAAGAACGGGCGCACCGTGTCGGTGGTGCTGCCCGCCCTGAACGAGGAGCGCACCGTCGCCGACGTCGTCGCCA GCATCCGCCCGCTGGTGGGCACACTGGTCGACGAACTGGTGGTGCTCGACTCCGGTTCCACCGACGCCACCGCCGAACGG GCGCGCGCGGCCGGCGCCGAGGTCGTCACCCGGGAGCAGGCGGTCCCCGAACTCGACCCGGTGCCGGGCAAGGGCGAGGT GCTGTGGCGTTCGCTGGCCGTGACCAGCGGCGACCTGATCGCCTTCGTCGACTCCGATCTCATCGACCCCGACCCGGCCT TCGTGCCCAAGCTGCTCGGCCCGCTGCTGCTGGTCGAGGACATGCACCTGGTCAAGGCCTACTACCGGCGCCCGCTGCGG CAGGGCTCGGCGGTGGAGGCGCACGGCGGCGGCCGGGTCACCGAACTGGTCGCGCGGCCGCTGCTGGCGGCCCTGCGGCC GGAACTGTGCGCGGTGCTGCAACCGCTCGGCGGCGAATACGCGGGCACCAGGGAACTGCTCACCTCCGTGCCGTTCGCGC CCGGCTACGGCGTGGAGATCGGGCTGCTGCTCGACACCTACGACCGGCTCGGCCTGTCGGCCATCGGCCAGGTCAACCTG GGTGTGCGCACGCACCGCAACCGGCCGCTGTCCGACCTCGGGGTGATGAGCAGGCAGATCCTGGGCACCGTGCTCGGCCG CAGCGGCGTCGTCGACTCCGGCGCGGCGCTCACCCAGTTCCCCCTGGTGGACGACACCTTCACCGCCCGCAGCACCGAGG TCTCCCTGACCGACCGCCCCCCGATGAACACCCTCCGCCCCACCCGCGCCGCCGCCTGA
Upstream 100 bases:
>100_bases TCTTCCGCGTTCACGAGGTCGCGCACACGCGGCGGGTGGTGGACATGATCGCCGCGATCCAGGGCATCCGGCCCCCCGCA CGAACCCTGCGAGGTCTGGT
Downstream 100 bases:
>100_bases GCGGGTCAGCGCCCGGAGTGGGAGCGGAGCGTGGCCGCGTAGGGCGTCCCGCTCGGGCGGAATTGGGTACCGCCTGAGCG GGTCAGCGCCCGGAGTGGGA
Product: putative glucosyl-3-phosphoglycerate synthase
Products: NA
Alternate protein names: Glycosyl Transferase Family Protein; Glycosyl Transferase; Glycosyl Transferase Family 2 Protein; Family 2 Glycosyl Transferase; Glycosyltransferase; Group 2 Family Glycosyl Transferase; Cell Wall Biosynthesis Glycosyl Transferase; Family 2 Glycosyltransferase; Family 2 Glycosyl Transferase Protein; Dolichyl-Phosphate Mannoosyltransferase Related Protein; Polypeptide N-Acetylgalactosaminyltransferase; Glycosyl Transferase Group 2 Family; Glycosyltransferase Involved In Cell Wall Biogenesis; Cell Wall Biosynthesis Glycosyltransferase; Glycosyl Transferase Group 2 Family Protein
Number of amino acids: Translated: 312; Mature: 312
Protein sequence:
>312_residues MKIQHRESAWASTNTWDNPEWAVEELIAAKNGRTVSVVLPALNEERTVADVVASIRPLVGTLVDELVVLDSGSTDATAER ARAAGAEVVTREQAVPELDPVPGKGEVLWRSLAVTSGDLIAFVDSDLIDPDPAFVPKLLGPLLLVEDMHLVKAYYRRPLR QGSAVEAHGGGRVTELVARPLLAALRPELCAVLQPLGGEYAGTRELLTSVPFAPGYGVEIGLLLDTYDRLGLSAIGQVNL GVRTHRNRPLSDLGVMSRQILGTVLGRSGVVDSGAALTQFPLVDDTFTARSTEVSLTDRPPMNTLRPTRAAA
Sequences:
>Translated_312_residues MKIQHRESAWASTNTWDNPEWAVEELIAAKNGRTVSVVLPALNEERTVADVVASIRPLVGTLVDELVVLDSGSTDATAER ARAAGAEVVTREQAVPELDPVPGKGEVLWRSLAVTSGDLIAFVDSDLIDPDPAFVPKLLGPLLLVEDMHLVKAYYRRPLR QGSAVEAHGGGRVTELVARPLLAALRPELCAVLQPLGGEYAGTRELLTSVPFAPGYGVEIGLLLDTYDRLGLSAIGQVNL GVRTHRNRPLSDLGVMSRQILGTVLGRSGVVDSGAALTQFPLVDDTFTARSTEVSLTDRPPMNTLRPTRAAA >Mature_312_residues MKIQHRESAWASTNTWDNPEWAVEELIAAKNGRTVSVVLPALNEERTVADVVASIRPLVGTLVDELVVLDSGSTDATAER ARAAGAEVVTREQAVPELDPVPGKGEVLWRSLAVTSGDLIAFVDSDLIDPDPAFVPKLLGPLLLVEDMHLVKAYYRRPLR QGSAVEAHGGGRVTELVARPLLAALRPELCAVLQPLGGEYAGTRELLTSVPFAPGYGVEIGLLLDTYDRLGLSAIGQVNL GVRTHRNRPLSDLGVMSRQILGTVLGRSGVVDSGAALTQFPLVDDTFTARSTEVSLTDRPPMNTLRPTRAAA
Specific function: Unknown
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33360; Mature: 33360
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: PS00141 ASP_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIQHRESAWASTNTWDNPEWAVEELIAAKNGRTVSVVLPALNEERTVADVVASIRPLVG CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH TLVDELVVLDSGSTDATAERARAAGAEVVTREQAVPELDPVPGKGEVLWRSLAVTSGDLI HHHHHHEEECCCCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEE AFVDSDLIDPDPAFVPKLLGPLLLVEDMHLVKAYYRRPLRQGSAVEAHGGGRVTELVARP EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHH LLAALRPELCAVLQPLGGEYAGTRELLTSVPFAPGYGVEIGLLLDTYDRLGLSAIGQVNL HHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCEEEEEEHHHHHHCHHHHCEEEC GVRTHRNRPLSDLGVMSRQILGTVLGRSGVVDSGAALTQFPLVDDTFTARSTEVSLTDRP CEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCEEEECCCC PMNTLRPTRAAA CCCCCCCHHCCC >Mature Secondary Structure MKIQHRESAWASTNTWDNPEWAVEELIAAKNGRTVSVVLPALNEERTVADVVASIRPLVG CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH TLVDELVVLDSGSTDATAERARAAGAEVVTREQAVPELDPVPGKGEVLWRSLAVTSGDLI HHHHHHEEECCCCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEE AFVDSDLIDPDPAFVPKLLGPLLLVEDMHLVKAYYRRPLRQGSAVEAHGGGRVTELVARP EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHH LLAALRPELCAVLQPLGGEYAGTRELLTSVPFAPGYGVEIGLLLDTYDRLGLSAIGQVNL HHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCEEEEEEHHHHHHCHHHHCEEEC GVRTHRNRPLSDLGVMSRQILGTVLGRSGVVDSGAALTQFPLVDDTFTARSTEVSLTDRP CEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCEEEECCCC PMNTLRPTRAAA CCCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA