| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
Click here to switch to the map view.
The map label for this gene is 54026419
Identifier: 54026419
GI number: 54026419
Start: 4617064
End: 4617387
Strand: Reverse
Name: 54026419
Synonym: nfa44460
Alternate gene names: NA
Gene position: 4617387-4617064 (Counterclockwise)
Preceding gene: 54026424
Following gene: 54026418
Centisome position: 76.69
GC content: 70.68
Gene sequence:
>324_bases ATGGCCCCGATATCGGCCGGTATCGGAGCCAGCTGTGTCCGTCTGGCAAGGTGCCCCAGGGCCGGCTCGGCCATCTTCGG GAGGGCGAGTACGCGCCACGCGCGCCGGCCGTCCCGGCGGACGTCGCTGCGCAGCGCGTTCAGGCCCTCGGCCGCGCCGC TCGATGTCGGCGCGCGCGGCCATCAGTTCACCCGCCGCCGCGATCCCCTCACGAACTCTCGCTACAACCGCTTCGCTGCC CTGCGGGTCTCGCCGCGCTATGCCCCTGCCGATCCGCCCAAGCCGATTCCGCAGACCATAGACGGATTCAGCGTTCCTGT ATGA
Upstream 100 bases:
>100_bases CCGCGCGGCGCTTACCACTCCCGCTGAACAGCCGGCGAAAACCCATTGCCGCCTTGGCGTCACCGAGACTCGTGTCCCAT GGTCGAGCAGTTCGGTGAGC
Downstream 100 bases:
>100_bases CTATGGACAACGATAGAACGTCGAACAATGTTGTAAATCAGCGCGTGCGCGGTCTCGAAGTGAAACAAGCCTGTCGGACA TTGCGACTATCGTGTGATGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 107; Mature: 106
Protein sequence:
>107_residues MAPISAGIGASCVRLARCPRAGSAIFGRASTRHARRPSRRTSLRSAFRPSAAPLDVGARGHQFTRRRDPLTNSRYNRFAA LRVSPRYAPADPPKPIPQTIDGFSVPV
Sequences:
>Translated_107_residues MAPISAGIGASCVRLARCPRAGSAIFGRASTRHARRPSRRTSLRSAFRPSAAPLDVGARGHQFTRRRDPLTNSRYNRFAA LRVSPRYAPADPPKPIPQTIDGFSVPV >Mature_106_residues APISAGIGASCVRLARCPRAGSAIFGRASTRHARRPSRRTSLRSAFRPSAAPLDVGARGHQFTRRRDPLTNSRYNRFAAL RVSPRYAPADPPKPIPQTIDGFSVPV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11622; Mature: 11491
Theoretical pI: Translated: 12.55; Mature: 12.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPISAGIGASCVRLARCPRAGSAIFGRASTRHARRPSRRTSLRSAFRPSAAPLDVGARG CCCCCCCCCHHHHHHHHCCCCCCEEECCCCCCHHCCCCHHHHHHHHCCCCCCCCCCCCCC HQFTRRRDPLTNSRYNRFAALRVSPRYAPADPPKPIPQTIDGFSVPV CCCHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure APISAGIGASCVRLARCPRAGSAIFGRASTRHARRPSRRTSLRSAFRPSAAPLDVGARG CCCCCCCCHHHHHHHHCCCCCCEEECCCCCCHHCCCCHHHHHHHHCCCCCCCCCCCCCC HQFTRRRDPLTNSRYNRFAALRVSPRYAPADPPKPIPQTIDGFSVPV CCCHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA