| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54026391
Identifier: 54026391
GI number: 54026391
Start: 4580178
End: 4582211
Strand: Reverse
Name: 54026391
Synonym: nfa44180
Alternate gene names: NA
Gene position: 4582211-4580178 (Counterclockwise)
Preceding gene: 54026392
Following gene: 54026390
Centisome position: 76.1
GC content: 63.96
Gene sequence:
>2034_bases ATGATCACGGATCCCGGTGCCGGCTCGGCAGGGTTGTGGGCGCACAGCCATATGACCGCGACCGGCGACGCGCAGGTCGG CCAGCAAATCGGCGCCCAATTCGTCGACTCCGTATTCCACGGTACGAGCATCTATTGCACATCCTCCGACGATCCGCCCG ACCATCAGCACAGGGTCGCGAGGACGCTCTTGGACGGCGGCAATCCGCGTCGGGCGGAAGAGATCCTGGCTGGCCTGCTC GGCAAGGGGGAAATCACCACGGAGCGTGCCTATTTCTACGTTCTGGCGGTGCTCAGCGATCGCCCGTTCACCGAGATCAC CGCGGATCTGACAGATGCCATTCACCACGCGATGCGCGGGGTGGAACCACTGCCAAGAGACGAGTGGCGGGATGCGCTCG ACGTTGTGGACATGCTGTTGCGCTACGCCCATGCGGAGTTCGAGGAGAGCGGTGCTGCGGGAGAACTTGCCGTCGCGCTC GACACGTTCGGAGGGTTGACCGCACGCAGGCAGGACGAGATCGACAGGCATCTGAACCTGATTCTCAGTGGGGCAGTGCA GGAGCGACTCTCCGGCCTACGGAAGTACCGGGTCGCCGCCCGGCGAATGGATGGCGACAGGGCAGCGCGGGCATGGAAGT TCTTCGAAGCCGAACCTCGCCCGCCCATGAGGTGGCCGATAACACCGGCTCCGGCCTCGGCTGGCGACTGGCGCGATGCC GTCATCGGATCTGTCGCGACATTGGCGTCCATCGGGTGCCTTGTCGTGGCCGGGAGCATGATGGGCGTGGTGATCGGCAT GGTGTTTGCCGTCGTCGGCGGCCTCCTCGCCTTTCGTGGAACGGCAGCGTGCCAGGCGTATGCTCGCCACGGGTACAGCG TCTGGTGGAACTACCAGGTGTATCCGCACCAGCAGGAAACCGCGTTCGACAGAATGGTCGACCAGTGCTTTCGCGATGCG GGGCAGACCGCTGAGTGGGAGATGACGGCTGGATACCGGGCGTATCTCAAACGTCGGCTCCAGTGGCAGTACGGGCCGGC GGTACATCCGGGCGAGCTGCGCTGGCTGGTCAGGTGGCATGCAGCTCGCTCGGCCCGGCTTCGGTCGTCGCCGCCGGCAA CACCCCCCGAAATACACCGGGCGAATAACCTGCGAATCGCAGGCGTGTTGGGGTGGGCCTTCGGTGTGGTCATCGTGTTG ATGTCCGGCAACGTGGTCGCAGCTGTTCTTGCCGGCGGTAGCTGGTTGGCGATCCGTGGAATCGCCGCCATCGTCGCGGT GACCCCGGCGCGCCATCTGCTGGATCGGGGTGCCGACGCACTGTTGGCCGACGAATGGACTGAGTACCAGCGCTGGACGG CGGTTCTGGCCGATCGTCCGAGCGATGCCGAGATGGAGCATTGGTTGGCGATGGACAAGGCGTACCTCAGGGACGAGGCA TTGCGACGAGCCAATCTCCGCGAGCGGGATCTTGTGACGTACGTAGTGTTGACCGAACCTGCTCCGTTCGCACGCAAAGG TCGAGTCACCAATGGTCCTACGAGGTATGAGGCCTACCATGTATACGTCTTTCTGCTCACGCGATACGGAATGCGCACTA CTCGGACCTTCCTGCGGGTAACCACGGGCGAGACGACCAACGAGCAGCGGGAGATGTTCACCTACGATGCCGTGGCATCG GCATCCGTGGTGGAGAAGCGGAGTCGGATATTCGGTACCGACGGCCGACTCGCGGCGGATAGACACATTGGACGGGAATT CCGGCTCACCTTGGTCAATGGGACTTGCATCGCCGAAGTCCGGGAGAACTCCCGAGCGAGGAGCGATGATGCGGCGAACG GCCCCCTTGATGAAGACGATGAAGCACCGAATTCGCGGTTCGACAGTGCCCTGCGGGTCCTGGAAGCAGTGGCGACCGAA GGGCGCGATTGGATCGCCCGCGATCTGGAGCGGAGGCGGCGGTGGGCACGCAATTGGGTCGGGGACCAAGCATCCGACGA TCGGTCCGGGCCGAGGATGAACCTGGTCAGGTAG
Upstream 100 bases:
>100_bases CGGCTACCCCGACTCTGCCGACCATTCACAACGAACTGATCGCGCGTGACCGTGCACAGGTCGGCAAGCAGATCGGCGCT CAGTTCAATTGGGGGCCGAG
Downstream 100 bases:
>100_bases GGCGCCACGTCGACATCACATCGAGTACTACAACTTCGACGAAAAGAAGGTCAAGGTGTCGGAAATACCGTCAACAACGA TGACAGCCGCTTCAGCGGAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 677; Mature: 677
Protein sequence:
>677_residues MITDPGAGSAGLWAHSHMTATGDAQVGQQIGAQFVDSVFHGTSIYCTSSDDPPDHQHRVARTLLDGGNPRRAEEILAGLL GKGEITTERAYFYVLAVLSDRPFTEITADLTDAIHHAMRGVEPLPRDEWRDALDVVDMLLRYAHAEFEESGAAGELAVAL DTFGGLTARRQDEIDRHLNLILSGAVQERLSGLRKYRVAARRMDGDRAARAWKFFEAEPRPPMRWPITPAPASAGDWRDA VIGSVATLASIGCLVVAGSMMGVVIGMVFAVVGGLLAFRGTAACQAYARHGYSVWWNYQVYPHQQETAFDRMVDQCFRDA GQTAEWEMTAGYRAYLKRRLQWQYGPAVHPGELRWLVRWHAARSARLRSSPPATPPEIHRANNLRIAGVLGWAFGVVIVL MSGNVVAAVLAGGSWLAIRGIAAIVAVTPARHLLDRGADALLADEWTEYQRWTAVLADRPSDAEMEHWLAMDKAYLRDEA LRRANLRERDLVTYVVLTEPAPFARKGRVTNGPTRYEAYHVYVFLLTRYGMRTTRTFLRVTTGETTNEQREMFTYDAVAS ASVVEKRSRIFGTDGRLAADRHIGREFRLTLVNGTCIAEVRENSRARSDDAANGPLDEDDEAPNSRFDSALRVLEAVATE GRDWIARDLERRRRWARNWVGDQASDDRSGPRMNLVR
Sequences:
>Translated_677_residues MITDPGAGSAGLWAHSHMTATGDAQVGQQIGAQFVDSVFHGTSIYCTSSDDPPDHQHRVARTLLDGGNPRRAEEILAGLL GKGEITTERAYFYVLAVLSDRPFTEITADLTDAIHHAMRGVEPLPRDEWRDALDVVDMLLRYAHAEFEESGAAGELAVAL DTFGGLTARRQDEIDRHLNLILSGAVQERLSGLRKYRVAARRMDGDRAARAWKFFEAEPRPPMRWPITPAPASAGDWRDA VIGSVATLASIGCLVVAGSMMGVVIGMVFAVVGGLLAFRGTAACQAYARHGYSVWWNYQVYPHQQETAFDRMVDQCFRDA GQTAEWEMTAGYRAYLKRRLQWQYGPAVHPGELRWLVRWHAARSARLRSSPPATPPEIHRANNLRIAGVLGWAFGVVIVL MSGNVVAAVLAGGSWLAIRGIAAIVAVTPARHLLDRGADALLADEWTEYQRWTAVLADRPSDAEMEHWLAMDKAYLRDEA LRRANLRERDLVTYVVLTEPAPFARKGRVTNGPTRYEAYHVYVFLLTRYGMRTTRTFLRVTTGETTNEQREMFTYDAVAS ASVVEKRSRIFGTDGRLAADRHIGREFRLTLVNGTCIAEVRENSRARSDDAANGPLDEDDEAPNSRFDSALRVLEAVATE GRDWIARDLERRRRWARNWVGDQASDDRSGPRMNLVR >Mature_677_residues MITDPGAGSAGLWAHSHMTATGDAQVGQQIGAQFVDSVFHGTSIYCTSSDDPPDHQHRVARTLLDGGNPRRAEEILAGLL GKGEITTERAYFYVLAVLSDRPFTEITADLTDAIHHAMRGVEPLPRDEWRDALDVVDMLLRYAHAEFEESGAAGELAVAL DTFGGLTARRQDEIDRHLNLILSGAVQERLSGLRKYRVAARRMDGDRAARAWKFFEAEPRPPMRWPITPAPASAGDWRDA VIGSVATLASIGCLVVAGSMMGVVIGMVFAVVGGLLAFRGTAACQAYARHGYSVWWNYQVYPHQQETAFDRMVDQCFRDA GQTAEWEMTAGYRAYLKRRLQWQYGPAVHPGELRWLVRWHAARSARLRSSPPATPPEIHRANNLRIAGVLGWAFGVVIVL MSGNVVAAVLAGGSWLAIRGIAAIVAVTPARHLLDRGADALLADEWTEYQRWTAVLADRPSDAEMEHWLAMDKAYLRDEA LRRANLRERDLVTYVVLTEPAPFARKGRVTNGPTRYEAYHVYVFLLTRYGMRTTRTFLRVTTGETTNEQREMFTYDAVAS ASVVEKRSRIFGTDGRLAADRHIGREFRLTLVNGTCIAEVRENSRARSDDAANGPLDEDDEAPNSRFDSALRVLEAVATE GRDWIARDLERRRRWARNWVGDQASDDRSGPRMNLVR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 75426; Mature: 75426
Theoretical pI: Translated: 7.16; Mature: 7.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITDPGAGSAGLWAHSHMTATGDAQVGQQIGAQFVDSVFHGTSIYCTSSDDPPDHQHRVA CCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHH RTLLDGGNPRRAEEILAGLLGKGEITTERAYFYVLAVLSDRPFTEITADLTDAIHHAMRG HHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHEEEEEHHCCCCHHHHHHHHHHHHHHHHHC VEPLPRDEWRDALDVVDMLLRYAHAEFEESGAAGELAVALDTFGGLTARRQDEIDRHLNL CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHCCCCHHHHHHHHHHHHH ILSGAVQERLSGLRKYRVAARRMDGDRAARAWKFFEAEPRPPMRWPITPAPASAGDWRDA HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHH VIGSVATLASIGCLVVAGSMMGVVIGMVFAVVGGLLAFRGTAACQAYARHGYSVWWNYQV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEEEE YPHQQETAFDRMVDQCFRDAGQTAEWEMTAGYRAYLKRRLQWQYGPAVHPGELRWLVRWH CCCHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH AARSARLRSSPPATPPEIHRANNLRIAGVLGWAFGVVIVLMSGNVVAAVLAGGSWLAIRG HHHHHHCCCCCCCCCCHHHCCCCEEEEHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH IAAIVAVTPARHLLDRGADALLADEWTEYQRWTAVLADRPSDAEMEHWLAMDKAYLRDEA HHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH LRRANLRERDLVTYVVLTEPAPFARKGRVTNGPTRYEAYHVYVFLLTRYGMRTTRTFLRV HHHCCCCCCCEEEEEEEECCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHEEEE TTGETTNEQREMFTYDAVASASVVEKRSRIFGTDGRLAADRHIGREFRLTLVNGTCIAEV ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCEEEEEEECCEEEHHH RENSRARSDDAANGPLDEDDEAPNSRFDSALRVLEAVATEGRDWIARDLERRRRWARNWV HHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC GDQASDDRSGPRMNLVR CCCCCCCCCCCCCCCCC >Mature Secondary Structure MITDPGAGSAGLWAHSHMTATGDAQVGQQIGAQFVDSVFHGTSIYCTSSDDPPDHQHRVA CCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHH RTLLDGGNPRRAEEILAGLLGKGEITTERAYFYVLAVLSDRPFTEITADLTDAIHHAMRG HHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHEEEEEHHCCCCHHHHHHHHHHHHHHHHHC VEPLPRDEWRDALDVVDMLLRYAHAEFEESGAAGELAVALDTFGGLTARRQDEIDRHLNL CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHCCCCHHHHHHHHHHHHH ILSGAVQERLSGLRKYRVAARRMDGDRAARAWKFFEAEPRPPMRWPITPAPASAGDWRDA HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHH VIGSVATLASIGCLVVAGSMMGVVIGMVFAVVGGLLAFRGTAACQAYARHGYSVWWNYQV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEEEE YPHQQETAFDRMVDQCFRDAGQTAEWEMTAGYRAYLKRRLQWQYGPAVHPGELRWLVRWH CCCHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH AARSARLRSSPPATPPEIHRANNLRIAGVLGWAFGVVIVLMSGNVVAAVLAGGSWLAIRG HHHHHHCCCCCCCCCCHHHCCCCEEEEHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH IAAIVAVTPARHLLDRGADALLADEWTEYQRWTAVLADRPSDAEMEHWLAMDKAYLRDEA HHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH LRRANLRERDLVTYVVLTEPAPFARKGRVTNGPTRYEAYHVYVFLLTRYGMRTTRTFLRV HHHCCCCCCCEEEEEEEECCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHEEEE TTGETTNEQREMFTYDAVASASVVEKRSRIFGTDGRLAADRHIGREFRLTLVNGTCIAEV ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCEEEEEEECCEEEHHH RENSRARSDDAANGPLDEDDEAPNSRFDSALRVLEAVATEGRDWIARDLERRRRWARNWV HHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC GDQASDDRSGPRMNLVR CCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA