Definition Nocardia farcinica IFM 10152 chromosome, complete genome.
Accession NC_006361
Length 6,021,225

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The map label for this gene is 54026391

Identifier: 54026391

GI number: 54026391

Start: 4580178

End: 4582211

Strand: Reverse

Name: 54026391

Synonym: nfa44180

Alternate gene names: NA

Gene position: 4582211-4580178 (Counterclockwise)

Preceding gene: 54026392

Following gene: 54026390

Centisome position: 76.1

GC content: 63.96

Gene sequence:

>2034_bases
ATGATCACGGATCCCGGTGCCGGCTCGGCAGGGTTGTGGGCGCACAGCCATATGACCGCGACCGGCGACGCGCAGGTCGG
CCAGCAAATCGGCGCCCAATTCGTCGACTCCGTATTCCACGGTACGAGCATCTATTGCACATCCTCCGACGATCCGCCCG
ACCATCAGCACAGGGTCGCGAGGACGCTCTTGGACGGCGGCAATCCGCGTCGGGCGGAAGAGATCCTGGCTGGCCTGCTC
GGCAAGGGGGAAATCACCACGGAGCGTGCCTATTTCTACGTTCTGGCGGTGCTCAGCGATCGCCCGTTCACCGAGATCAC
CGCGGATCTGACAGATGCCATTCACCACGCGATGCGCGGGGTGGAACCACTGCCAAGAGACGAGTGGCGGGATGCGCTCG
ACGTTGTGGACATGCTGTTGCGCTACGCCCATGCGGAGTTCGAGGAGAGCGGTGCTGCGGGAGAACTTGCCGTCGCGCTC
GACACGTTCGGAGGGTTGACCGCACGCAGGCAGGACGAGATCGACAGGCATCTGAACCTGATTCTCAGTGGGGCAGTGCA
GGAGCGACTCTCCGGCCTACGGAAGTACCGGGTCGCCGCCCGGCGAATGGATGGCGACAGGGCAGCGCGGGCATGGAAGT
TCTTCGAAGCCGAACCTCGCCCGCCCATGAGGTGGCCGATAACACCGGCTCCGGCCTCGGCTGGCGACTGGCGCGATGCC
GTCATCGGATCTGTCGCGACATTGGCGTCCATCGGGTGCCTTGTCGTGGCCGGGAGCATGATGGGCGTGGTGATCGGCAT
GGTGTTTGCCGTCGTCGGCGGCCTCCTCGCCTTTCGTGGAACGGCAGCGTGCCAGGCGTATGCTCGCCACGGGTACAGCG
TCTGGTGGAACTACCAGGTGTATCCGCACCAGCAGGAAACCGCGTTCGACAGAATGGTCGACCAGTGCTTTCGCGATGCG
GGGCAGACCGCTGAGTGGGAGATGACGGCTGGATACCGGGCGTATCTCAAACGTCGGCTCCAGTGGCAGTACGGGCCGGC
GGTACATCCGGGCGAGCTGCGCTGGCTGGTCAGGTGGCATGCAGCTCGCTCGGCCCGGCTTCGGTCGTCGCCGCCGGCAA
CACCCCCCGAAATACACCGGGCGAATAACCTGCGAATCGCAGGCGTGTTGGGGTGGGCCTTCGGTGTGGTCATCGTGTTG
ATGTCCGGCAACGTGGTCGCAGCTGTTCTTGCCGGCGGTAGCTGGTTGGCGATCCGTGGAATCGCCGCCATCGTCGCGGT
GACCCCGGCGCGCCATCTGCTGGATCGGGGTGCCGACGCACTGTTGGCCGACGAATGGACTGAGTACCAGCGCTGGACGG
CGGTTCTGGCCGATCGTCCGAGCGATGCCGAGATGGAGCATTGGTTGGCGATGGACAAGGCGTACCTCAGGGACGAGGCA
TTGCGACGAGCCAATCTCCGCGAGCGGGATCTTGTGACGTACGTAGTGTTGACCGAACCTGCTCCGTTCGCACGCAAAGG
TCGAGTCACCAATGGTCCTACGAGGTATGAGGCCTACCATGTATACGTCTTTCTGCTCACGCGATACGGAATGCGCACTA
CTCGGACCTTCCTGCGGGTAACCACGGGCGAGACGACCAACGAGCAGCGGGAGATGTTCACCTACGATGCCGTGGCATCG
GCATCCGTGGTGGAGAAGCGGAGTCGGATATTCGGTACCGACGGCCGACTCGCGGCGGATAGACACATTGGACGGGAATT
CCGGCTCACCTTGGTCAATGGGACTTGCATCGCCGAAGTCCGGGAGAACTCCCGAGCGAGGAGCGATGATGCGGCGAACG
GCCCCCTTGATGAAGACGATGAAGCACCGAATTCGCGGTTCGACAGTGCCCTGCGGGTCCTGGAAGCAGTGGCGACCGAA
GGGCGCGATTGGATCGCCCGCGATCTGGAGCGGAGGCGGCGGTGGGCACGCAATTGGGTCGGGGACCAAGCATCCGACGA
TCGGTCCGGGCCGAGGATGAACCTGGTCAGGTAG

Upstream 100 bases:

>100_bases
CGGCTACCCCGACTCTGCCGACCATTCACAACGAACTGATCGCGCGTGACCGTGCACAGGTCGGCAAGCAGATCGGCGCT
CAGTTCAATTGGGGGCCGAG

Downstream 100 bases:

>100_bases
GGCGCCACGTCGACATCACATCGAGTACTACAACTTCGACGAAAAGAAGGTCAAGGTGTCGGAAATACCGTCAACAACGA
TGACAGCCGCTTCAGCGGAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 677; Mature: 677

Protein sequence:

>677_residues
MITDPGAGSAGLWAHSHMTATGDAQVGQQIGAQFVDSVFHGTSIYCTSSDDPPDHQHRVARTLLDGGNPRRAEEILAGLL
GKGEITTERAYFYVLAVLSDRPFTEITADLTDAIHHAMRGVEPLPRDEWRDALDVVDMLLRYAHAEFEESGAAGELAVAL
DTFGGLTARRQDEIDRHLNLILSGAVQERLSGLRKYRVAARRMDGDRAARAWKFFEAEPRPPMRWPITPAPASAGDWRDA
VIGSVATLASIGCLVVAGSMMGVVIGMVFAVVGGLLAFRGTAACQAYARHGYSVWWNYQVYPHQQETAFDRMVDQCFRDA
GQTAEWEMTAGYRAYLKRRLQWQYGPAVHPGELRWLVRWHAARSARLRSSPPATPPEIHRANNLRIAGVLGWAFGVVIVL
MSGNVVAAVLAGGSWLAIRGIAAIVAVTPARHLLDRGADALLADEWTEYQRWTAVLADRPSDAEMEHWLAMDKAYLRDEA
LRRANLRERDLVTYVVLTEPAPFARKGRVTNGPTRYEAYHVYVFLLTRYGMRTTRTFLRVTTGETTNEQREMFTYDAVAS
ASVVEKRSRIFGTDGRLAADRHIGREFRLTLVNGTCIAEVRENSRARSDDAANGPLDEDDEAPNSRFDSALRVLEAVATE
GRDWIARDLERRRRWARNWVGDQASDDRSGPRMNLVR

Sequences:

>Translated_677_residues
MITDPGAGSAGLWAHSHMTATGDAQVGQQIGAQFVDSVFHGTSIYCTSSDDPPDHQHRVARTLLDGGNPRRAEEILAGLL
GKGEITTERAYFYVLAVLSDRPFTEITADLTDAIHHAMRGVEPLPRDEWRDALDVVDMLLRYAHAEFEESGAAGELAVAL
DTFGGLTARRQDEIDRHLNLILSGAVQERLSGLRKYRVAARRMDGDRAARAWKFFEAEPRPPMRWPITPAPASAGDWRDA
VIGSVATLASIGCLVVAGSMMGVVIGMVFAVVGGLLAFRGTAACQAYARHGYSVWWNYQVYPHQQETAFDRMVDQCFRDA
GQTAEWEMTAGYRAYLKRRLQWQYGPAVHPGELRWLVRWHAARSARLRSSPPATPPEIHRANNLRIAGVLGWAFGVVIVL
MSGNVVAAVLAGGSWLAIRGIAAIVAVTPARHLLDRGADALLADEWTEYQRWTAVLADRPSDAEMEHWLAMDKAYLRDEA
LRRANLRERDLVTYVVLTEPAPFARKGRVTNGPTRYEAYHVYVFLLTRYGMRTTRTFLRVTTGETTNEQREMFTYDAVAS
ASVVEKRSRIFGTDGRLAADRHIGREFRLTLVNGTCIAEVRENSRARSDDAANGPLDEDDEAPNSRFDSALRVLEAVATE
GRDWIARDLERRRRWARNWVGDQASDDRSGPRMNLVR
>Mature_677_residues
MITDPGAGSAGLWAHSHMTATGDAQVGQQIGAQFVDSVFHGTSIYCTSSDDPPDHQHRVARTLLDGGNPRRAEEILAGLL
GKGEITTERAYFYVLAVLSDRPFTEITADLTDAIHHAMRGVEPLPRDEWRDALDVVDMLLRYAHAEFEESGAAGELAVAL
DTFGGLTARRQDEIDRHLNLILSGAVQERLSGLRKYRVAARRMDGDRAARAWKFFEAEPRPPMRWPITPAPASAGDWRDA
VIGSVATLASIGCLVVAGSMMGVVIGMVFAVVGGLLAFRGTAACQAYARHGYSVWWNYQVYPHQQETAFDRMVDQCFRDA
GQTAEWEMTAGYRAYLKRRLQWQYGPAVHPGELRWLVRWHAARSARLRSSPPATPPEIHRANNLRIAGVLGWAFGVVIVL
MSGNVVAAVLAGGSWLAIRGIAAIVAVTPARHLLDRGADALLADEWTEYQRWTAVLADRPSDAEMEHWLAMDKAYLRDEA
LRRANLRERDLVTYVVLTEPAPFARKGRVTNGPTRYEAYHVYVFLLTRYGMRTTRTFLRVTTGETTNEQREMFTYDAVAS
ASVVEKRSRIFGTDGRLAADRHIGREFRLTLVNGTCIAEVRENSRARSDDAANGPLDEDDEAPNSRFDSALRVLEAVATE
GRDWIARDLERRRRWARNWVGDQASDDRSGPRMNLVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 75426; Mature: 75426

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITDPGAGSAGLWAHSHMTATGDAQVGQQIGAQFVDSVFHGTSIYCTSSDDPPDHQHRVA
CCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHH
RTLLDGGNPRRAEEILAGLLGKGEITTERAYFYVLAVLSDRPFTEITADLTDAIHHAMRG
HHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHEEEEEHHCCCCHHHHHHHHHHHHHHHHHC
VEPLPRDEWRDALDVVDMLLRYAHAEFEESGAAGELAVALDTFGGLTARRQDEIDRHLNL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHCCCCHHHHHHHHHHHHH
ILSGAVQERLSGLRKYRVAARRMDGDRAARAWKFFEAEPRPPMRWPITPAPASAGDWRDA
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHH
VIGSVATLASIGCLVVAGSMMGVVIGMVFAVVGGLLAFRGTAACQAYARHGYSVWWNYQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEEEE
YPHQQETAFDRMVDQCFRDAGQTAEWEMTAGYRAYLKRRLQWQYGPAVHPGELRWLVRWH
CCCHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
AARSARLRSSPPATPPEIHRANNLRIAGVLGWAFGVVIVLMSGNVVAAVLAGGSWLAIRG
HHHHHHCCCCCCCCCCHHHCCCCEEEEHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH
IAAIVAVTPARHLLDRGADALLADEWTEYQRWTAVLADRPSDAEMEHWLAMDKAYLRDEA
HHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
LRRANLRERDLVTYVVLTEPAPFARKGRVTNGPTRYEAYHVYVFLLTRYGMRTTRTFLRV
HHHCCCCCCCEEEEEEEECCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHEEEE
TTGETTNEQREMFTYDAVASASVVEKRSRIFGTDGRLAADRHIGREFRLTLVNGTCIAEV
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCEEEEEEECCEEEHHH
RENSRARSDDAANGPLDEDDEAPNSRFDSALRVLEAVATEGRDWIARDLERRRRWARNWV
HHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
GDQASDDRSGPRMNLVR
CCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MITDPGAGSAGLWAHSHMTATGDAQVGQQIGAQFVDSVFHGTSIYCTSSDDPPDHQHRVA
CCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHH
RTLLDGGNPRRAEEILAGLLGKGEITTERAYFYVLAVLSDRPFTEITADLTDAIHHAMRG
HHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHEEEEEHHCCCCHHHHHHHHHHHHHHHHHC
VEPLPRDEWRDALDVVDMLLRYAHAEFEESGAAGELAVALDTFGGLTARRQDEIDRHLNL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHCCCCHHHHHHHHHHHHH
ILSGAVQERLSGLRKYRVAARRMDGDRAARAWKFFEAEPRPPMRWPITPAPASAGDWRDA
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHH
VIGSVATLASIGCLVVAGSMMGVVIGMVFAVVGGLLAFRGTAACQAYARHGYSVWWNYQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEEEE
YPHQQETAFDRMVDQCFRDAGQTAEWEMTAGYRAYLKRRLQWQYGPAVHPGELRWLVRWH
CCCHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
AARSARLRSSPPATPPEIHRANNLRIAGVLGWAFGVVIVLMSGNVVAAVLAGGSWLAIRG
HHHHHHCCCCCCCCCCHHHCCCCEEEEHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH
IAAIVAVTPARHLLDRGADALLADEWTEYQRWTAVLADRPSDAEMEHWLAMDKAYLRDEA
HHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
LRRANLRERDLVTYVVLTEPAPFARKGRVTNGPTRYEAYHVYVFLLTRYGMRTTRTFLRV
HHHCCCCCCCEEEEEEEECCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHEEEE
TTGETTNEQREMFTYDAVASASVVEKRSRIFGTDGRLAADRHIGREFRLTLVNGTCIAEV
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCEEEEEEECCEEEHHH
RENSRARSDDAANGPLDEDDEAPNSRFDSALRVLEAVATEGRDWIARDLERRRRWARNWV
HHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
GDQASDDRSGPRMNLVR
CCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA