Definition Nocardia farcinica IFM 10152 chromosome, complete genome.
Accession NC_006361
Length 6,021,225

Click here to switch to the map view.

The map label for this gene is 54026388

Identifier: 54026388

GI number: 54026388

Start: 4575954

End: 4576370

Strand: Reverse

Name: 54026388

Synonym: nfa44150

Alternate gene names: NA

Gene position: 4576370-4575954 (Counterclockwise)

Preceding gene: 54026390

Following gene: 54026387

Centisome position: 76.0

GC content: 69.54

Gene sequence:

>417_bases
ATGAGCGACGCGAGCGGGTTCGATCCGCGGGCGGAAGTCGAGGCGGTGCACCGCCTGCTGGCCACCTGGCTGGGGACCGA
CGCGGACCCGCAGGTGCTGGACGATTTCCTCGCCACCCAGCACGAGGACTTCTCGATGGTGACCGTCGGCGGCGCGGTGC
TGGGCAAGAAGGAGTTACGGGACGGGTTGCGTGACGCGCGAAACAGTGTGCCCGGCTTGGTGATCGAGATCTCCGAGCTC
GAAATGGTCTGGCATGCGGGCGGCCTGGTGGTTGTCCGGTTCGTGGAGGGGCATCGGAGCGGTGGCGCGGTGGAGTTCCG
GCGCACCACCGCTGTCCTGGCCGCCGATCCGGGACGGCGGGATCGGTGGCTGGCACTGCAGGAAACCGCGATCGCGCCGC
GGGCGGATCGCGCATGA

Upstream 100 bases:

>100_bases
CCCCACTTCTCGATTCCCCGCTGATTCCGCCAGATTTTCTGGGCCCGGGTCGGTGCGTGCTCGGACGGCTATCCTGCACT
GCATGAGCGACCTGCACTGC

Downstream 100 bases:

>100_bases
TCGGCGGGGGATCAATTCGCGTGAGACAAGCTGTGCGCCTCGGTATTCCGGTACTCGTCGCGACGATGATCGCCGCCGGC
CCCGGCCTCGCGACCGCCGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MSDASGFDPRAEVEAVHRLLATWLGTDADPQVLDDFLATQHEDFSMVTVGGAVLGKKELRDGLRDARNSVPGLVIEISEL
EMVWHAGGLVVVRFVEGHRSGGAVEFRRTTAVLAADPGRRDRWLALQETAIAPRADRA

Sequences:

>Translated_138_residues
MSDASGFDPRAEVEAVHRLLATWLGTDADPQVLDDFLATQHEDFSMVTVGGAVLGKKELRDGLRDARNSVPGLVIEISEL
EMVWHAGGLVVVRFVEGHRSGGAVEFRRTTAVLAADPGRRDRWLALQETAIAPRADRA
>Mature_137_residues
SDASGFDPRAEVEAVHRLLATWLGTDADPQVLDDFLATQHEDFSMVTVGGAVLGKKELRDGLRDARNSVPGLVIEISELE
MVWHAGGLVVVRFVEGHRSGGAVEFRRTTAVLAADPGRRDRWLALQETAIAPRADRA

Specific function: Unknown

COG id: COG4460

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15016; Mature: 14885

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDASGFDPRAEVEAVHRLLATWLGTDADPQVLDDFLATQHEDFSMVTVGGAVLGKKELR
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEECCHHHCHHHHH
DGLRDARNSVPGLVIEISELEMVWHAGGLVVVRFVEGHRSGGAVEFRRTTAVLAADPGRR
HHHHHHHHCCCCEEEEHHHHHEEHCCCCEEEEEEECCCCCCCEEEEEEEEEEEEECCCCC
DRWLALQETAIAPRADRA
CCEEEEHHHCCCCCCCCC
>Mature Secondary Structure 
SDASGFDPRAEVEAVHRLLATWLGTDADPQVLDDFLATQHEDFSMVTVGGAVLGKKELR
CCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEECCHHHCHHHHH
DGLRDARNSVPGLVIEISELEMVWHAGGLVVVRFVEGHRSGGAVEFRRTTAVLAADPGRR
HHHHHHHHCCCCEEEEHHHHHEEHCCCCEEEEEEECCCCCCCEEEEEEEEEEEEECCCCC
DRWLALQETAIAPRADRA
CCEEEEHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA