| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54026385
Identifier: 54026385
GI number: 54026385
Start: 4571757
End: 4573154
Strand: Reverse
Name: 54026385
Synonym: nfa44120
Alternate gene names: NA
Gene position: 4573154-4571757 (Counterclockwise)
Preceding gene: 54026386
Following gene: 54026384
Centisome position: 75.95
GC content: 72.46
Gene sequence:
>1398_bases GTGACTGTTCCGACAGATCTGCCCACCACCGCCGGTGAACTGCGCGCGGCGGGCTACCAGCCCCGCGGGGTGAAGACCGA GATCCGCGAGAACCTGCTGGCGTTGCTGGCCTCCGGTGGTGAGCCGTGGCCGGGCATCGTCGGGTTCGACCGCACCGTGT TGCCGCAGCTCGAGCGGGCGCTGCTGGCGGGCCACGACGTGGTGTTGCTGGGCGAGCGCGGCCAGGGCAAGACCCGGCTG CTGCGCACGCTGGCCGGGTTGCTCGACGAGTGGACGCCGGTGATCGCCGGGACCGAACTGGGCGAGCACCCGCTGGATCC GATCACGCCCGCCGGCCGCAGGCTGGCCGCCGAACTGGGCGACGACCTGCCGGTGGCCTGGCGGCACCGGTCCGAGCGCT ATGCCGAGAAGCTGGCCACCCCCGACACGTCCGTCGGTGACCTGATCGGTGACGTCGACCCGGTGAAGGTGGCCGAGGGC CGCAGCCTCGGCGACCCCGAGACCATCCACTTCGGCCTGGTGCCGCGCGCCCACCGCGGCATCGTCGCCGTCAACGAGCT GCCCGACCTGGCCGAGCGGATCCAGGTCGCGCTGCTCAACGTGATGGAGGAGCGCGACATCCAGGTCCGCGGCTACACCC TGCGGCTGCCGTTGGACGTGTTGCTCGTCGCCACCGCCAACCCCGAGGACTACACCAACCGCGGCCGCATCATCACCCCG CTCAAGGACCGCTTCGGCGCCGAGATCCGCACCCACTATCCGCTGGACATGCGCGCGGAGATGGATTTGGTGCGCCAGGA AGCCGATCTGGTCGCCGAGGTCGGCGATCCGCTGATCGAGGTGCTGGCTCGGTTCGTGCGGCACCTGCGCGATTCGTCGG CGATCGACCAGCGTTCCGGCGTGTCGGCGCGGTTCGCGGTGGCGGCGGCGGAGACGCTGGCCGCGGCCGCGCTGCGACGG TCGGCGCTGACCGGCGAGTATCCCGCGGTCGCCCGGCCGGTGGATCTGGAGGCCGTGCCCGCGGTGTTGCGCGGCAAGCT CGAGTTCGAGTCCGGAGAGGAAGGGCGCGAACAGGAGCACCTGACGCATCTGCTGCGCCGCTCGTTCGCCGAGACCGCGC GTGACCGGCTGGGCGGGCTGGACCTGCGGCCGCTGGTGGCGGCGGTGGCCGACGGTCACCTGGTCACCACCGGTGAGCGG GTGCCCGGTGCGGAGGTGCTCGCCGCGCTGCCCGAGCTGCCGGTGCTGCACGAGGTGGCCGACCGGCTCGGCGCGGGCAC CGACGGCCCGCCCGCCCGCATCGCCTCGGCCGTCGAATTCGCTTTGGAGTCGCTGTATCTGGCGCGCGAGATCGCCAAGG ACTCCGATGGCGGCACCGCCGTCTACGGCCGCTCATGA
Upstream 100 bases:
>100_bases TTCCTCGGCCGTCCTGCACAGGTCGAGTTCGCGACGGGTGAACAGCCCCGCTGCCCGCTTCGCGTCGACCGCGCGGCGAA ACAGTCGTAGTTTCGATGGG
Downstream 100 bases:
>100_bases CCACACCGGACCGCTACTCCTACGGCCCCTATCACGAGGGCCCCGACCCGCTCGCGCCGCCGCTGGACCTGCGCGCGGCC TTGGACGCGATCGGCCGCGA
Product: putative magnesium chelatase
Products: NA
Alternate protein names: Magnesium Chelatase; Magnesium Chelatase Subunit ChlI; Magnesium Chelatase ChlI Subunit; Mg-Chelatase Subunit ChlI-Like Protein; Mg-Chelatase Subunit ChlI; Magnesium-Chelatase Subunit ChlI; Magnesium Chelatase Subunit Chll; Magnesium Chelatase Subunit ChlI Family Protein; Magnesium Chelatase Related Protein; Magnesium-Chelatase Subunit Chli; Mg-Chelatase Subunit; Magnesium Chelatase Subunit ChlI Family; Magnesium Chelatase Subunit Chli; Mg-Chelatase Subunit Chli-Like Protein; Mg-Chelatase Subunit ChlI /Chld; LOW QUALITY PROTEIN Magnesium Chelatase
Number of amino acids: Translated: 465; Mature: 464
Protein sequence:
>465_residues MTVPTDLPTTAGELRAAGYQPRGVKTEIRENLLALLASGGEPWPGIVGFDRTVLPQLERALLAGHDVVLLGERGQGKTRL LRTLAGLLDEWTPVIAGTELGEHPLDPITPAGRRLAAELGDDLPVAWRHRSERYAEKLATPDTSVGDLIGDVDPVKVAEG RSLGDPETIHFGLVPRAHRGIVAVNELPDLAERIQVALLNVMEERDIQVRGYTLRLPLDVLLVATANPEDYTNRGRIITP LKDRFGAEIRTHYPLDMRAEMDLVRQEADLVAEVGDPLIEVLARFVRHLRDSSAIDQRSGVSARFAVAAAETLAAAALRR SALTGEYPAVARPVDLEAVPAVLRGKLEFESGEEGREQEHLTHLLRRSFAETARDRLGGLDLRPLVAAVADGHLVTTGER VPGAEVLAALPELPVLHEVADRLGAGTDGPPARIASAVEFALESLYLAREIAKDSDGGTAVYGRS
Sequences:
>Translated_465_residues MTVPTDLPTTAGELRAAGYQPRGVKTEIRENLLALLASGGEPWPGIVGFDRTVLPQLERALLAGHDVVLLGERGQGKTRL LRTLAGLLDEWTPVIAGTELGEHPLDPITPAGRRLAAELGDDLPVAWRHRSERYAEKLATPDTSVGDLIGDVDPVKVAEG RSLGDPETIHFGLVPRAHRGIVAVNELPDLAERIQVALLNVMEERDIQVRGYTLRLPLDVLLVATANPEDYTNRGRIITP LKDRFGAEIRTHYPLDMRAEMDLVRQEADLVAEVGDPLIEVLARFVRHLRDSSAIDQRSGVSARFAVAAAETLAAAALRR SALTGEYPAVARPVDLEAVPAVLRGKLEFESGEEGREQEHLTHLLRRSFAETARDRLGGLDLRPLVAAVADGHLVTTGER VPGAEVLAALPELPVLHEVADRLGAGTDGPPARIASAVEFALESLYLAREIAKDSDGGTAVYGRS >Mature_464_residues TVPTDLPTTAGELRAAGYQPRGVKTEIRENLLALLASGGEPWPGIVGFDRTVLPQLERALLAGHDVVLLGERGQGKTRLL RTLAGLLDEWTPVIAGTELGEHPLDPITPAGRRLAAELGDDLPVAWRHRSERYAEKLATPDTSVGDLIGDVDPVKVAEGR SLGDPETIHFGLVPRAHRGIVAVNELPDLAERIQVALLNVMEERDIQVRGYTLRLPLDVLLVATANPEDYTNRGRIITPL KDRFGAEIRTHYPLDMRAEMDLVRQEADLVAEVGDPLIEVLARFVRHLRDSSAIDQRSGVSARFAVAAAETLAAAALRRS ALTGEYPAVARPVDLEAVPAVLRGKLEFESGEEGREQEHLTHLLRRSFAETARDRLGGLDLRPLVAAVADGHLVTTGERV PGAEVLAALPELPVLHEVADRLGAGTDGPPARIASAVEFALESLYLAREIAKDSDGGTAVYGRS
Specific function: Unknown
COG id: COG1239
COG function: function code H; Mg-chelatase subunit ChlI
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50190; Mature: 50059
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVPTDLPTTAGELRAAGYQPRGVKTEIRENLLALLASGGEPWPGIVGFDRTVLPQLERA CCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH LLAGHDVVLLGERGQGKTRLLRTLAGLLDEWTPVIAGTELGEHPLDPITPAGRRLAAELG HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCHHHHHHHHHC DDLPVAWRHRSERYAEKLATPDTSVGDLIGDVDPVKVAEGRSLGDPETIHFGLVPRAHRG CCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEECCCCCCCCCCEEEEECCCCCCCC IVAVNELPDLAERIQVALLNVMEERDIQVRGYTLRLPLDVLLVATANPEDYTNRGRIITP EEEEHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCEEEEEEEECCCCCCCCCCEEECC LKDRFGAEIRTHYPLDMRAEMDLVRQEADLVAEVGDPLIEVLARFVRHLRDSSAIDQRSG HHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHCC VSARFAVAAAETLAAAALRRSALTGEYPAVARPVDLEAVPAVLRGKLEFESGEEGREQEH CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHH LTHLLRRSFAETARDRLGGLDLRPLVAAVADGHLVTTGERVPGAEVLAALPELPVLHEVA HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEECCCCCCHHHHHHHCCCCCHHHHHH DRLGAGTDGPPARIASAVEFALESLYLAREIAKDSDGGTAVYGRS HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCC >Mature Secondary Structure TVPTDLPTTAGELRAAGYQPRGVKTEIRENLLALLASGGEPWPGIVGFDRTVLPQLERA CCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH LLAGHDVVLLGERGQGKTRLLRTLAGLLDEWTPVIAGTELGEHPLDPITPAGRRLAAELG HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCHHHHHHHHHC DDLPVAWRHRSERYAEKLATPDTSVGDLIGDVDPVKVAEGRSLGDPETIHFGLVPRAHRG CCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEECCCCCCCCCCEEEEECCCCCCCC IVAVNELPDLAERIQVALLNVMEERDIQVRGYTLRLPLDVLLVATANPEDYTNRGRIITP EEEEHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCEEEEEEEECCCCCCCCCCEEECC LKDRFGAEIRTHYPLDMRAEMDLVRQEADLVAEVGDPLIEVLARFVRHLRDSSAIDQRSG HHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHCC VSARFAVAAAETLAAAALRRSALTGEYPAVARPVDLEAVPAVLRGKLEFESGEEGREQEH CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHH LTHLLRRSFAETARDRLGGLDLRPLVAAVADGHLVTTGERVPGAEVLAALPELPVLHEVA HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEECCCCCCHHHHHHHCCCCCHHHHHH DRLGAGTDGPPARIASAVEFALESLYLAREIAKDSDGGTAVYGRS HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA