| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is tftE [H]
Identifier: 54026335
GI number: 54026335
Start: 4526207
End: 4527280
Strand: Reverse
Name: tftE [H]
Synonym: nfa43640
Alternate gene names: 54026335
Gene position: 4527280-4526207 (Counterclockwise)
Preceding gene: 54026336
Following gene: 54026334
Centisome position: 75.19
GC content: 75.51
Gene sequence:
>1074_bases ATGAGTAGCGACAGCACACCAGCGGGTTTCGTGCACGAGCAGCGCGCGGTGCGGGTGGTGTTCCGCGCCGGGTCGTGTGC GGACCTGCCGCGGGAGGTCGAGCGGCTGGGGCTGGACCGGGTCGCGGTCGTGGCCGGACGCCGATACGCGGACCGGGTGG CCGGGATGCTCGGGGCGCGGGCGGTGGTCGTGGTGGCCGATCCGCGGATGCACGTCCCCGTCGAGCAGGCGGAGGCGGTG CGGGCCCGTGCCACCGAAGCGCGCGTCGACGGGCTGGTCGCGGTGGGCGGCGGATCGGCGGTCGGGTTGGCCAAGGCGGT GGCGCTCACCCACCGGGTGCCGATCGTGGCCGTGCCGACGAGCTTCTCCGGCTCGGAGATGACCCGGGTGTGGGGGACCA CCGCGGGCGGTGTGAAGCGCACCGGCCGGGATCCGGTCGTCGCGCCGCGGGTGGTGCTCTACGACCCGGAGCTGCTGGCC GGCTTCCCGACCGCGCTGGCGGTGCCCTCGGCGTTCAACGCCCTCGCGCACGCGGTGGAAGCGCGTTACGCCCCCGACCG CACGCCGGTGACCGACCTGGTGGCCGAGGCGGCGATCGGCACGATGCTCGCCGCCCTGCCCGCGCTGGCCGCGGATGATC CGGCCGGGCGCGCCGGAGCGTTGCGCGGGGCCTGGATGTGCGGGATGAGCCTGGACTCGACGTCGATGTCGTTGCACCAC AAGCTCGCGCATGTGATCGGCGGCGGTTTCGCACTGCCGCACGCGGAAACACACACGGTTCTGCTGCCCCATGTCCTCGG CTACAACGCGGCGGCGGCGCCGGACGCCGCCGCCGCCGTGGGCGCCGCATTGCCCGGCGGTGCCGAACCGCCCGCGGCGG GCCGGGCCTTGCAGTCCTTCGCCGCGGGCCTGGGCGCCCCGACCCGCCTCGCCGACCTGGGCCTGCCCCGCGATGCCCTC GACCGAGTGGTCGACACCGTGCTCGACGCGCCGTACGCGAATCCCGCACCCCTGGACCGCGCCGCGTTGCGCGAGCTGGT AGAACGCGCGTGGTCGGGTGCGCCGGTGCCGTGA
Upstream 100 bases:
>100_bases GGTGGTGCCCGGCGGTCCGGGTCGACAACGACGTCGTCGGTGGCAACGGCGCCACCCCGGACCGCCGAGCCGAAGAACAT CGGAAACTAGGGTTGGTTCG
Downstream 100 bases:
>100_bases CCACCCGCCTCCCTCGCGTTCCACGCCACATCTCACACCCCGGCCTCCCGGCCCCGGACCCGAACGACCGTTAGCGTGGC GGTGATTCGACGATCGGAAG
Product: putative dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 357; Mature: 356
Protein sequence:
>357_residues MSSDSTPAGFVHEQRAVRVVFRAGSCADLPREVERLGLDRVAVVAGRRYADRVAGMLGARAVVVVADPRMHVPVEQAEAV RARATEARVDGLVAVGGGSAVGLAKAVALTHRVPIVAVPTSFSGSEMTRVWGTTAGGVKRTGRDPVVAPRVVLYDPELLA GFPTALAVPSAFNALAHAVEARYAPDRTPVTDLVAEAAIGTMLAALPALAADDPAGRAGALRGAWMCGMSLDSTSMSLHH KLAHVIGGGFALPHAETHTVLLPHVLGYNAAAAPDAAAAVGAALPGGAEPPAAGRALQSFAAGLGAPTRLADLGLPRDAL DRVVDTVLDAPYANPAPLDRAALRELVERAWSGAPVP
Sequences:
>Translated_357_residues MSSDSTPAGFVHEQRAVRVVFRAGSCADLPREVERLGLDRVAVVAGRRYADRVAGMLGARAVVVVADPRMHVPVEQAEAV RARATEARVDGLVAVGGGSAVGLAKAVALTHRVPIVAVPTSFSGSEMTRVWGTTAGGVKRTGRDPVVAPRVVLYDPELLA GFPTALAVPSAFNALAHAVEARYAPDRTPVTDLVAEAAIGTMLAALPALAADDPAGRAGALRGAWMCGMSLDSTSMSLHH KLAHVIGGGFALPHAETHTVLLPHVLGYNAAAAPDAAAAVGAALPGGAEPPAAGRALQSFAAGLGAPTRLADLGLPRDAL DRVVDTVLDAPYANPAPLDRAALRELVERAWSGAPVP >Mature_356_residues SSDSTPAGFVHEQRAVRVVFRAGSCADLPREVERLGLDRVAVVAGRRYADRVAGMLGARAVVVVADPRMHVPVEQAEAVR ARATEARVDGLVAVGGGSAVGLAKAVALTHRVPIVAVPTSFSGSEMTRVWGTTAGGVKRTGRDPVVAPRVVLYDPELLAG FPTALAVPSAFNALAHAVEARYAPDRTPVTDLVAEAAIGTMLAALPALAADDPAGRAGALRGAWMCGMSLDSTSMSLHHK LAHVIGGGFALPHAETHTVLLPHVLGYNAAAAPDAAAAVGAALPGGAEPPAAGRALQSFAAGLGAPTRLADLGLPRDALD RVVDTVLDAPYANPAPLDRAALRELVERAWSGAPVP
Specific function: Unknown
COG id: COG1454
COG function: function code C; Alcohol dehydrogenase, class IV
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the iron-containing alcohol dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI48994951, Length=266, Percent_Identity=31.203007518797, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI87082107, Length=260, Percent_Identity=31.5384615384615, Blast_Score=95, Evalue=7e-21, Organism=Escherichia coli, GI1789163, Length=375, Percent_Identity=26.6666666666667, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI1787493, Length=308, Percent_Identity=25.3246753246753, Blast_Score=69, Evalue=5e-13, Organism=Saccharomyces cerevisiae, GI6321181, Length=296, Percent_Identity=28.3783783783784, Blast_Score=103, Evalue=4e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001670 [H]
Pfam domain/function: PF00465 Fe-ADH [H]
EC number: =1.3.1.32 [H]
Molecular weight: Translated: 36463; Mature: 36332
Theoretical pI: Translated: 7.37; Mature: 7.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSDSTPAGFVHEQRAVRVVFRAGSCADLPREVERLGLDRVAVVAGRRYADRVAGMLGAR CCCCCCCCCHHHHHHHEEEEEECCCCCCHHHHHHHHCCCHHHHHHCHHHHHHHHHHHCCC AVVVVADPRMHVPVEQAEAVRARATEARVDGLVAVGGGSAVGLAKAVALTHRVPIVAVPT EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHCCCEEEECC SFSGSEMTRVWGTTAGGVKRTGRDPVVAPRVVLYDPELLAGFPTALAVPSAFNALAHAVE CCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEEECCHHHHCCCHHHHHHHHHHHHHHHHH ARYAPDRTPVTDLVAEAAIGTMLAALPALAADDPAGRAGALRGAWMCGMSLDSTSMSLHH HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHEEECCCCCCHHHHHHH KLAHVIGGGFALPHAETHTVLLPHVLGYNAAAAPDAAAAVGAALPGGAEPPAAGRALQSF HHHHHHCCCEECCCCCCCEEEHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHH AAGLGAPTRLADLGLPRDALDRVVDTVLDAPYANPAPLDRAALRELVERAWSGAPVP HHHCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SSDSTPAGFVHEQRAVRVVFRAGSCADLPREVERLGLDRVAVVAGRRYADRVAGMLGAR CCCCCCCCHHHHHHHEEEEEECCCCCCHHHHHHHHCCCHHHHHHCHHHHHHHHHHHCCC AVVVVADPRMHVPVEQAEAVRARATEARVDGLVAVGGGSAVGLAKAVALTHRVPIVAVPT EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHCCCEEEECC SFSGSEMTRVWGTTAGGVKRTGRDPVVAPRVVLYDPELLAGFPTALAVPSAFNALAHAVE CCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEEECCHHHHCCCHHHHHHHHHHHHHHHHH ARYAPDRTPVTDLVAEAAIGTMLAALPALAADDPAGRAGALRGAWMCGMSLDSTSMSLHH HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHEEECCCCCCHHHHHHH KLAHVIGGGFALPHAETHTVLLPHVLGYNAAAAPDAAAAVGAALPGGAEPPAAGRALQSF HHHHHHCCCEECCCCCCCEEEHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHH AAGLGAPTRLADLGLPRDALDRVVDTVLDAPYANPAPLDRAALRELVERAWSGAPVP HHHCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7538273 [H]