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The map label for this gene is cspA [H]

Identifier: 54026194

GI number: 54026194

Start: 4374026

End: 4374232

Strand: Reverse

Name: cspA [H]

Synonym: nfa42230

Alternate gene names: 54026194

Gene position: 4374232-4374026 (Counterclockwise)

Preceding gene: 54026195

Following gene: 54026193

Centisome position: 72.65

GC content: 65.7

Gene sequence:

>207_bases
ATGGTTCAGGGCACGGTGTTGTGGTTCGACAGCAAGAAGGGCTTCGGCTTCATCGCCCAGGACGGCGGTGGCGCCGACGT
GTTCGTCGACTACCTGGAGCTCGTCGGTGGTGGATTCCGCTCGTTGCACGAAGGGCAGCGGGTGCGGTTCGACCTACGCC
AGAGCAAGTCCGGCCCCGAGGCCGTCGGGGTGCACGTCATCGGCTGA

Upstream 100 bases:

>100_bases
ACGCCGGGGTTCGGCATGACTGCGGCGTGACGTGGACGAACTGCGCCGGGTCGCAGTAAGATTCGTCGGTTCTGCGCGTT
CGACAGAAGGTTCGAGACGT

Downstream 100 bases:

>100_bases
CCGGCGCTGTCGAACGGATATTCGTGGTGTGATCCACCGCTTTCCTGATGGGTTTCCCCTGTCTCGAAGTGCGGTGATAT
GTGAATTTTGCCGCACACGC

Product: putative cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 68; Mature: 68

Protein sequence:

>68_residues
MVQGTVLWFDSKKGFGFIAQDGGGADVFVDYLELVGGGFRSLHEGQRVRFDLRQSKSGPEAVGVHVIG

Sequences:

>Translated_68_residues
MVQGTVLWFDSKKGFGFIAQDGGGADVFVDYLELVGGGFRSLHEGQRVRFDLRQSKSGPEAVGVHVIG
>Mature_68_residues
MVQGTVLWFDSKKGFGFIAQDGGGADVFVDYLELVGGGFRSLHEGQRVRFDLRQSKSGPEAVGVHVIG

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=45.4545454545455, Blast_Score=65, Evalue=6e-13,
Organism=Escherichia coli, GI1786841, Length=63, Percent_Identity=44.4444444444444, Blast_Score=64, Evalue=1e-12,
Organism=Escherichia coli, GI1787107, Length=61, Percent_Identity=47.5409836065574, Blast_Score=64, Evalue=2e-12,
Organism=Escherichia coli, GI2367114, Length=63, Percent_Identity=44.4444444444444, Blast_Score=64, Evalue=2e-12,
Organism=Escherichia coli, GI1789979, Length=60, Percent_Identity=45, Blast_Score=59, Evalue=5e-11,

Paralogues:

None

Copy number: 8300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7326; Mature: 7326

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQGTVLWFDSKKGFGFIAQDGGGADVFVDYLELVGGGFRSLHEGQRVRFDLRQSKSGPE
CCCEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCC
AVGVHVIG
EEEEEEEC
>Mature Secondary Structure
MVQGTVLWFDSKKGFGFIAQDGGGADVFVDYLELVGGGFRSLHEGQRVRFDLRQSKSGPE
CCCEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCC
AVGVHVIG
EEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]