Click here to switch to the map view.

The map label for this gene is yhdJ [C]

Identifier: 54026003

GI number: 54026003

Start: 4184983

End: 4185648

Strand: Reverse

Name: yhdJ [C]

Synonym: nfa40330

Alternate gene names: 54026003

Gene position: 4185648-4184983 (Counterclockwise)

Preceding gene: 54026004

Following gene: 54026000

Centisome position: 69.51

GC content: 67.12

Gene sequence:

>666_bases
TTGCCCACCCCCTACTACCGCGACCCGTACGTCACCCTCTACCACGGCTCCTGCCTGGACAACGACGACTGGCTGACCGC
CGACATCCTCGTCACCGACCCGCCGTACGGCATGAGCTACACCGGCCACGGCGGACACAAAACCCTCATCGCCGGCGACG
ACACCACCACGATTCGAGACCAGGCCCTCACCCGCTGGTTCGACCACAACCCCGACAACCCCGCCCTCGTCTTCGGCACC
TGGCGCGTCCCACGACCCCCGAACCCGAAACTCGTTCTCGTGTGGGACAAAACCGACGGCACCGGCCCCGGCATGGGCGA
CCTCACATGCGCGTTCGGCTCATCCCACGAAGAAATCTACCTATGGGGCAAATGGCCCCGCGGCCAACACCGACGCATGG
GCTCCGTACTCCGCACCGCAGTCGGTATGTCGTCGCTGTCCCGCAAGATCGGCCACCCCACACCCAAACCCATCGGGCTC
ATGGAAACCCTCATCGAACGCAGCATCCCCGACGGTGTCATCGCCGACCCGTTCGCCGGCTCCGGCTCCACCCTCGTCGC
CGCACAGAACCTCGGGCGCCGCGCGGTCGGCGTCGAACTGGAGGAACGGTACTGCGAACTGATCGCCCGCCGCCTGGACC
AAGGCACCCTCGACGCCGCCGCCTGA

Upstream 100 bases:

>100_bases
GCGAGGTCCGCATCAGCTACGGCACCGAAGGCGACGGCCTGTGGATCCGCACCGCGATCGTCGACGACGAACTCACGAAA
CACCGAGAATAGGAGGCTGA

Downstream 100 bases:

>100_bases
CACGAGAAACCCCCGCCCGGTCTGACCAGCGGGGGCACGCAACCAGGCGGTCGGGTCACCCGACGCGCAGCAACTCCCAG
CAATGACGGGGATAGAACTC

Product: putative DNA methyltransferase

Products: S-Adenosyl-L-Homocysteine; DNA 6-Methylaminopurine. [C]

Alternate protein names: DNA Methylase; DNA-Methyltransferase; DNA Methylase N-4/N-6 Domain-Containing Protein; DNA Methyltransferase; DNA Methylase; Site-Specific DNA-Methyltransferase

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MPTPYYRDPYVTLYHGSCLDNDDWLTADILVTDPPYGMSYTGHGGHKTLIAGDDTTTIRDQALTRWFDHNPDNPALVFGT
WRVPRPPNPKLVLVWDKTDGTGPGMGDLTCAFGSSHEEIYLWGKWPRGQHRRMGSVLRTAVGMSSLSRKIGHPTPKPIGL
METLIERSIPDGVIADPFAGSGSTLVAAQNLGRRAVGVELEERYCELIARRLDQGTLDAAA

Sequences:

>Translated_221_residues
MPTPYYRDPYVTLYHGSCLDNDDWLTADILVTDPPYGMSYTGHGGHKTLIAGDDTTTIRDQALTRWFDHNPDNPALVFGT
WRVPRPPNPKLVLVWDKTDGTGPGMGDLTCAFGSSHEEIYLWGKWPRGQHRRMGSVLRTAVGMSSLSRKIGHPTPKPIGL
METLIERSIPDGVIADPFAGSGSTLVAAQNLGRRAVGVELEERYCELIARRLDQGTLDAAA
>Mature_220_residues
PTPYYRDPYVTLYHGSCLDNDDWLTADILVTDPPYGMSYTGHGGHKTLIAGDDTTTIRDQALTRWFDHNPDNPALVFGTW
RVPRPPNPKLVLVWDKTDGTGPGMGDLTCAFGSSHEEIYLWGKWPRGQHRRMGSVLRTAVGMSSLSRKIGHPTPKPIGLM
ETLIERSIPDGVIADPFAGSGSTLVAAQNLGRRAVGVELEERYCELIARRLDQGTLDAAA

Specific function: Unknown

COG id: COG0863

COG function: function code L; DNA modification methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.1.1.72 [C]

Molecular weight: Translated: 24302; Mature: 24171

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTPYYRDPYVTLYHGSCLDNDDWLTADILVTDPPYGMSYTGHGGHKTLIAGDDTTTIRD
CCCCCCCCCEEEEEECCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEEECCCCCHHHH
QALTRWFDHNPDNPALVFGTWRVPRPPNPKLVLVWDKTDGTGPGMGDLTCAFGSSHEEIY
HHHHHHHCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCEEE
LWGKWPRGQHRRMGSVLRTAVGMSSLSRKIGHPTPKPIGLMETLIERSIPDGVIADPFAG
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEECCCCC
SGSTLVAAQNLGRRAVGVELEERYCELIARRLDQGTLDAAA
CCCEEEEEHHCCCEEECCCHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
PTPYYRDPYVTLYHGSCLDNDDWLTADILVTDPPYGMSYTGHGGHKTLIAGDDTTTIRD
CCCCCCCCEEEEEECCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEEECCCCCHHHH
QALTRWFDHNPDNPALVFGTWRVPRPPNPKLVLVWDKTDGTGPGMGDLTCAFGSSHEEIY
HHHHHHHCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCEEE
LWGKWPRGQHRRMGSVLRTAVGMSSLSRKIGHPTPKPIGLMETLIERSIPDGVIADPFAG
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEECCCCC
SGSTLVAAQNLGRRAVGVELEERYCELIARRLDQGTLDAAA
CCCEEEEEHHCCCEEECCCHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: S-Adenosyl-L-Methionine; DNA Adenine; DNA [C]

Specific reaction: S-Adenosyl-L-Methionine + DNA Adenine = S-Adenosyl-L-Homocysteine + DNA 6-Methylaminopurine. Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA