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The map label for this gene is 54025951

Identifier: 54025951

GI number: 54025951

Start: 4164152

End: 4164802

Strand: Reverse

Name: 54025951

Synonym: nfa39810

Alternate gene names: NA

Gene position: 4164802-4164152 (Counterclockwise)

Preceding gene: 54025952

Following gene: 54025950

Centisome position: 69.17

GC content: 68.36

Gene sequence:

>651_bases
GTGATCCAGTCCAGCCACACAGGCCAGCGAGGCCGCGCCTACGACACCCACCGCGGGATCCACGGACACATCCGCGTCGC
GGGCGCGTCCACCCGGCTCATCGTCGCCACCGACGCCAGCTACAAACACGGCATCGGCGGATTCGGATACTTCACCCGCA
ACGGCCACTGGGGACTCGCCACCCGCCACTCCGGGCGAGGACGGCTCGCCGCAATCCGTGACCACGGCACCGGCTCCCTC
GTCAACGAAATCCGCGCAGTCGGACTCGTCATCGAACACTTCCCCGGACGCGCGATCAAATTCCTCATCGACTCCACCGC
CGCCATCGACCACCTCCACTCATGGCAAGCCGGCCACACCGACCGCATGCCACGCGGCTACAGCCTCCGCCCGCGTGTGC
GAGGCGACGCCACACCTGCCCTCGTCCGGTACGCCCACCAGATCGCGGGCCGCACCGATCTGAAATTCGTGCACGTCGCC
GGACACAGTGGCCACCTGATGAACGAGGCCGCCGACACCCTCGCCACCATCGCCCGCACCGCCCTGACTCCACCCAATGA
CGAGTACGCGCTCGGGGAGAGAGCGGCCAGCGTCGCGGCAGCCTTCCTGTACGCGATCCACGACCCCAACAAGCTCGCGG
TCGCTGCCTGA

Upstream 100 bases:

>100_bases
ACTGCCTGCACCTAGATAGCGGTGCGATGTATCCGCTCGACGCCTTCCCTGACAAACTCGTCACCCCCGACGGCTTCTCC
TTCTTCATCGAGGTTCTGTC

Downstream 100 bases:

>100_bases
AAGCCTCCGACCCCGCCGCGGTGACCACCCAAGGACAGCGCGCCGTGCGGCCGGGCCAGGAGGAGGAGCGCGGCGCCCGA
GATCGACCCCCACATCTCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MIQSSHTGQRGRAYDTHRGIHGHIRVAGASTRLIVATDASYKHGIGGFGYFTRNGHWGLATRHSGRGRLAAIRDHGTGSL
VNEIRAVGLVIEHFPGRAIKFLIDSTAAIDHLHSWQAGHTDRMPRGYSLRPRVRGDATPALVRYAHQIAGRTDLKFVHVA
GHSGHLMNEAADTLATIARTALTPPNDEYALGERAASVAAAFLYAIHDPNKLAVAA

Sequences:

>Translated_216_residues
MIQSSHTGQRGRAYDTHRGIHGHIRVAGASTRLIVATDASYKHGIGGFGYFTRNGHWGLATRHSGRGRLAAIRDHGTGSL
VNEIRAVGLVIEHFPGRAIKFLIDSTAAIDHLHSWQAGHTDRMPRGYSLRPRVRGDATPALVRYAHQIAGRTDLKFVHVA
GHSGHLMNEAADTLATIARTALTPPNDEYALGERAASVAAAFLYAIHDPNKLAVAA
>Mature_216_residues
MIQSSHTGQRGRAYDTHRGIHGHIRVAGASTRLIVATDASYKHGIGGFGYFTRNGHWGLATRHSGRGRLAAIRDHGTGSL
VNEIRAVGLVIEHFPGRAIKFLIDSTAAIDHLHSWQAGHTDRMPRGYSLRPRVRGDATPALVRYAHQIAGRTDLKFVHVA
GHSGHLMNEAADTLATIARTALTPPNDEYALGERAASVAAAFLYAIHDPNKLAVAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23283; Mature: 23283

Theoretical pI: Translated: 10.76; Mature: 10.76

Prosite motif: PS50879 RNASE_H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQSSHTGQRGRAYDTHRGIHGHIRVAGASTRLIVATDASYKHGIGGFGYFTRNGHWGLA
CCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCEEEECCCCCCEE
TRHSGRGRLAAIRDHGTGSLVNEIRAVGLVIEHFPGRAIKFLIDSTAAIDHLHSWQAGHT
EEECCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCCC
DRMPRGYSLRPRVRGDATPALVRYAHQIAGRTDLKFVHVAGHSGHLMNEAADTLATIART
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
ALTPPNDEYALGERAASVAAAFLYAIHDPNKLAVAA
HCCCCCCCHHHHHHHHHHHHHHHHEEECCCEEEEEC
>Mature Secondary Structure
MIQSSHTGQRGRAYDTHRGIHGHIRVAGASTRLIVATDASYKHGIGGFGYFTRNGHWGLA
CCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCEEEECCCCCCEE
TRHSGRGRLAAIRDHGTGSLVNEIRAVGLVIEHFPGRAIKFLIDSTAAIDHLHSWQAGHT
EEECCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCCC
DRMPRGYSLRPRVRGDATPALVRYAHQIAGRTDLKFVHVAGHSGHLMNEAADTLATIART
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
ALTPPNDEYALGERAASVAAAFLYAIHDPNKLAVAA
HCCCCCCCHHHHHHHHHHHHHHHHEEECCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA