| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54025802
Identifier: 54025802
GI number: 54025802
Start: 4051807
End: 4052580
Strand: Reverse
Name: 54025802
Synonym: nfa38320
Alternate gene names: NA
Gene position: 4052580-4051807 (Counterclockwise)
Preceding gene: 54025804
Following gene: 54025801
Centisome position: 67.3
GC content: 78.04
Gene sequence:
>774_bases GTGTTCACGATCGCGGCCCTGGTCCCTTCGCCGCCCGTCCTCGTTCCGGAACTGTGCGGCGGGCAGCCCGGCCTGTCCGG CGACGAGCGGGCCGAGCACCTGGCCCGGCTGCGCACGGCCACGCTGGCGGCCGTGGGCGAGCTCTCCGGCGTCCGCGACT GGACGGTGATCGGGGTGGACGAGGCCGATCTGAAGGCCGGTTCGGACACCGCGGGCACCTTCCGCGGCTTCGGCGCCGAC GTGCGCGCCGGCCTGTCGGCGCGGGCGCTGGACGGCGAGCCCGATCCGCGGCTCCCGCTGCCCCTGTTGATCGCGGGCTG GCTGCGCGGGATCGCCGCGCCCGCGGCGAGTGCCGACGCGCTGCTGGTCGCCGCCGACACCCCGCCCCCGCGCTGCCGGG AACTGGGCGCCCAGCTGCGCGCCGACCTCGACGCCGCGCCCGGGCCGCGCGGGGTGCTGGTGGTCGCCGACGGCGCCTGC ACGCTGTCCACCAGCGCCCCCGGCTACTGGCACGAGGACGCGCCCGCCCTCCAACAGCGGCTCGACGACGCCCTCGACGC GGGCGACCGGGCCGGGCTGGCCGATCTCGACGCCGCGCGGTGCGCGCGGGTCGGCCTCGCGGGCCGGGCCGCCTACCAGG TGCTGGCCGGGCTGTTCGCCCCCGACGCGGCCGACCCCGCGGTGCGCACCTACTATCGGGACGCGCCGTTCGGCGTCGGC TATCACGTCAGCGTGTGGCGTCCGGGGGAGTATCGGGAAGGCAGGGCCGGATGA
Upstream 100 bases:
>100_bases TCCCCACCGGGATTGACCCGCGAGACACTCGAACCCGCCACCCTGCCCCGGCCCGTGGTACCGCGCGGCCCCGCCACGCC GAGCCGATACGGTTGACGGC
Downstream 100 bases:
>100_bases GGGTGCCGATCGCGGTGGTCGGTCCCACCGCCACCGGCAAATCCGAGCTCGGGCTCGCGCTCGCCGAACACCTCGACGGC GAGATCGTCAACATCGACGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 257; Mature: 257
Protein sequence:
>257_residues MFTIAALVPSPPVLVPELCGGQPGLSGDERAEHLARLRTATLAAVGELSGVRDWTVIGVDEADLKAGSDTAGTFRGFGAD VRAGLSARALDGEPDPRLPLPLLIAGWLRGIAAPAASADALLVAADTPPPRCRELGAQLRADLDAAPGPRGVLVVADGAC TLSTSAPGYWHEDAPALQQRLDDALDAGDRAGLADLDAARCARVGLAGRAAYQVLAGLFAPDAADPAVRTYYRDAPFGVG YHVSVWRPGEYREGRAG
Sequences:
>Translated_257_residues MFTIAALVPSPPVLVPELCGGQPGLSGDERAEHLARLRTATLAAVGELSGVRDWTVIGVDEADLKAGSDTAGTFRGFGAD VRAGLSARALDGEPDPRLPLPLLIAGWLRGIAAPAASADALLVAADTPPPRCRELGAQLRADLDAAPGPRGVLVVADGAC TLSTSAPGYWHEDAPALQQRLDDALDAGDRAGLADLDAARCARVGLAGRAAYQVLAGLFAPDAADPAVRTYYRDAPFGVG YHVSVWRPGEYREGRAG >Mature_257_residues MFTIAALVPSPPVLVPELCGGQPGLSGDERAEHLARLRTATLAAVGELSGVRDWTVIGVDEADLKAGSDTAGTFRGFGAD VRAGLSARALDGEPDPRLPLPLLIAGWLRGIAAPAASADALLVAADTPPPRCRELGAQLRADLDAAPGPRGVLVVADGAC TLSTSAPGYWHEDAPALQQRLDDALDAGDRAGLADLDAARCARVGLAGRAAYQVLAGLFAPDAADPAVRTYYRDAPFGVG YHVSVWRPGEYREGRAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26506; Mature: 26506
Theoretical pI: Translated: 4.62; Mature: 4.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFTIAALVPSPPVLVPELCGGQPGLSGDERAEHLARLRTATLAAVGELSGVRDWTVIGVD CEEEEEECCCCCEECHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC EADLKAGSDTAGTFRGFGADVRAGLSARALDGEPDPRLPLPLLIAGWLRGIAAPAASADA HHHCCCCCCCCCHHHCCCHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCE LLVAADTPPPRCRELGAQLRADLDAAPGPRGVLVVADGACTLSTSAPGYWHEDAPALQQR EEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEECCCCCCCCCCCCHHHHHH LDDALDAGDRAGLADLDAARCARVGLAGRAAYQVLAGLFAPDAADPAVRTYYRDAPFGVG HHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCC YHVSVWRPGEYREGRAG EEEEEECCCCCCCCCCC >Mature Secondary Structure MFTIAALVPSPPVLVPELCGGQPGLSGDERAEHLARLRTATLAAVGELSGVRDWTVIGVD CEEEEEECCCCCEECHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC EADLKAGSDTAGTFRGFGADVRAGLSARALDGEPDPRLPLPLLIAGWLRGIAAPAASADA HHHCCCCCCCCCHHHCCCHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCE LLVAADTPPPRCRELGAQLRADLDAAPGPRGVLVVADGACTLSTSAPGYWHEDAPALQQR EEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEECCCCCCCCCCCCHHHHHH LDDALDAGDRAGLADLDAARCARVGLAGRAAYQVLAGLFAPDAADPAVRTYYRDAPFGVG HHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCC YHVSVWRPGEYREGRAG EEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA