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The map label for this gene is ytcD [H]

Identifier: 54025775

GI number: 54025775

Start: 4028885

End: 4029259

Strand: Reverse

Name: ytcD [H]

Synonym: nfa38050

Alternate gene names: 54025775

Gene position: 4029259-4028885 (Counterclockwise)

Preceding gene: 54025778

Following gene: 54025769

Centisome position: 66.92

GC content: 70.93

Gene sequence:

>375_bases
ATGGGCGAGAAGAGATTCGGCCCGTACTTCTGCGGCATCGACGCCGCGATGGACGTCGTCAGCGGCAAATGGAAGGGCCT
GATCCTCTGGGAGCTGGAGAACCACGGCGTGCGCCGGTTCGGCGAGCTGCGCCGCGGCCTGCCCGGCATCTCCGAGAAGA
TGCTCATCCAGCAACTGCGCGAGCTCGAGGAGGACGGGATCGTCGACCGCCAGGCCCATCCCGAGGTGCCGCCGCGGGTG
GAGTACCGGCTGACCGAGCTGGGCCGGTCGCTGAACCGTGCGCTCGAACCGCTGGCGACCTGGGGCCGCGATCGGATCGA
GCGCATCGGCGCCCAGCGGGTGCAGCCGCCGCGGGAGGACCTCGCGGCGGGCTGA

Upstream 100 bases:

>100_bases
GTGCGGCGCCGGACTCCACCCTCACCCGATACGGTGGAACCGGCAAGTACCTACTATTCGGTGGGGTACTCACCCACGGG
TGTGTGTAGAGGTGGGAGGC

Downstream 100 bases:

>100_bases
TCGTCCGTCAGCGGGTGGCCGATGACACGTGCTCGTCGTCGGCGAACGGTGCGCCGCCGCGGTCGGCGCCGTGCCCGGTG
CCCGCCCGGCGCAGCTGCCA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 123

Protein sequence:

>124_residues
MGEKRFGPYFCGIDAAMDVVSGKWKGLILWELENHGVRRFGELRRGLPGISEKMLIQQLRELEEDGIVDRQAHPEVPPRV
EYRLTELGRSLNRALEPLATWGRDRIERIGAQRVQPPREDLAAG

Sequences:

>Translated_124_residues
MGEKRFGPYFCGIDAAMDVVSGKWKGLILWELENHGVRRFGELRRGLPGISEKMLIQQLRELEEDGIVDRQAHPEVPPRV
EYRLTELGRSLNRALEPLATWGRDRIERIGAQRVQPPREDLAAG
>Mature_123_residues
GEKRFGPYFCGIDAAMDVVSGKWKGLILWELENHGVRRFGELRRGLPGISEKMLIQQLRELEEDGIVDRQAHPEVPPRVE
YRLTELGRSLNRALEPLATWGRDRIERIGAQRVQPPREDLAAG

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=91, Percent_Identity=45.0549450549451, Blast_Score=79, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 14173; Mature: 14041

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGEKRFGPYFCGIDAAMDVVSGKWKGLILWELENHGVRRFGELRRGLPGISEKMLIQQLR
CCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHH
ELEEDGIVDRQAHPEVPPRVEYRLTELGRSLNRALEPLATWGRDRIERIGAQRVQPPRED
HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
LAAG
CCCC
>Mature Secondary Structure 
GEKRFGPYFCGIDAAMDVVSGKWKGLILWELENHGVRRFGELRRGLPGISEKMLIQQLR
CCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHH
ELEEDGIVDRQAHPEVPPRVEYRLTELGRSLNRALEPLATWGRDRIERIGAQRVQPPRED
HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
LAAG
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]