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The map label for this gene is appY [C]

Identifier: 54025762

GI number: 54025762

Start: 4011749

End: 4012909

Strand: Reverse

Name: appY [C]

Synonym: nfa37920

Alternate gene names: 54025762

Gene position: 4012909-4011749 (Counterclockwise)

Preceding gene: 54025764

Following gene: 54025758

Centisome position: 66.65

GC content: 71.83

Gene sequence:

>1161_bases
ATGACAGCGATGACCTGGGAATGGCGGCGTACGGTCGGTCTGTCGGCGGTGCTGGTCGAGGTGGCGGCCGAGCACGGTCT
CGGCGTGCGCGCGTGCCTGCGCGGCACCGGCATCGATCCGGCACTGCTGAACACGCCGGACGGCGAGGTCACCGCCGCAC
AGGAACTGGCCCTGGTCCGCAATATCGTGACGGCACTGGGCGATCCGCCCGGCCTCGGCCTGGCCGCGGGTGCCCGCACC
CACGTCACCAGCTACGGCGCGCTCGGCCTGGCATTGCTGGCCAGCCCGACCGTGCGCTCGGCGGTGGACCTGCTCATGCG
CTACATCCGCATGACCACGACCTTCGCCCGCATCTGGCACGTCTACCGTGACGACGAACTGCACCTGTACGCCGACGACA
GCGACGTGCCCGCCGAGCTGCGCGGGTTCCTGCTCGAACGCGACGTCACCGTGCTGCTGGCGAACTGGGCCGCGGTCTAT
CACGCCCCGGCGCCGGTACTGCGTGGCTCGGTGTCGGGCGGGTTGCGCCCGCGGCTGCAGCCGCTCATCGACGAGTACGG
CCTCGACTGCGTGGACGGTGTCGGCCCGCACCTGGTCGTCTTCGACACCTCCGGATTCGAGGATCCGCTACCGCAGGCCA
GCCCGCTCACCGCGCGGCTGTTCGAGCAGCAGTGCGCGCAGCTGCTGCATCGGCGCGGGCTGCGCCACGGCATCGCCGGA
ACGGTGCGCGAGGTGCTGCTGCGCCGGATGGGGGAGCGGGTCGGGCAGGAGGAGATGGCGGCGCTGCTGCACATGAGCCT
GCGGACGCTGCGGCGCAGGCTCGCCGAGGAAGGCACCAGCTACCGCGGGCTGTGCTCGCAGACCTACGGGGAACTGGCCG
AGGAACTGCTGGCCGGCGGCCTGACCGTCGAGGACGTCGCCTACCGGATGGGCTATGCGGGCGCGCCGAGCTTCTCCACC
GCGTTCAAGCAGTGGCGCGGGATCTCACCCGGGCATTTCGCCCGCGCGGTGGCGCCGCGGCGCGGGGCGACCGCGCCCGG
CCGGCGTCAGATCTCGATCACCGAGTCGGCGACCACCCGGCCGCCGAGCCGCACCCAGCCGTCGGAATCCCACTCGGTGA
ACAGCTGTGAACCGGCACCCTGGGTGATCTTGAGGCCCTGA

Upstream 100 bases:

>100_bases
CTCGGTGGGCGACACCGGGTTTCGGCGGACGCGGCGGACGAGCGGGTGTCCGGTCGATGTCCGATCGTTTTCCTGCGCGG
ACCGGTCATAGCCGACAACC

Downstream 100 bases:

>100_bases
CGCAACAGCGCCGTGAGGGCGACCGCGGCGGCGCCGGTCGCGGCGTCCTCGGCGATTCCCATGGTGGGAGCGAACATCCG
CGAGCGCACCGACCCGCGCA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 385

Protein sequence:

>386_residues
MTAMTWEWRRTVGLSAVLVEVAAEHGLGVRACLRGTGIDPALLNTPDGEVTAAQELALVRNIVTALGDPPGLGLAAGART
HVTSYGALGLALLASPTVRSAVDLLMRYIRMTTTFARIWHVYRDDELHLYADDSDVPAELRGFLLERDVTVLLANWAAVY
HAPAPVLRGSVSGGLRPRLQPLIDEYGLDCVDGVGPHLVVFDTSGFEDPLPQASPLTARLFEQQCAQLLHRRGLRHGIAG
TVREVLLRRMGERVGQEEMAALLHMSLRTLRRRLAEEGTSYRGLCSQTYGELAEELLAGGLTVEDVAYRMGYAGAPSFST
AFKQWRGISPGHFARAVAPRRGATAPGRRQISITESATTRPPSRTQPSESHSVNSCEPAPWVILRP

Sequences:

>Translated_386_residues
MTAMTWEWRRTVGLSAVLVEVAAEHGLGVRACLRGTGIDPALLNTPDGEVTAAQELALVRNIVTALGDPPGLGLAAGART
HVTSYGALGLALLASPTVRSAVDLLMRYIRMTTTFARIWHVYRDDELHLYADDSDVPAELRGFLLERDVTVLLANWAAVY
HAPAPVLRGSVSGGLRPRLQPLIDEYGLDCVDGVGPHLVVFDTSGFEDPLPQASPLTARLFEQQCAQLLHRRGLRHGIAG
TVREVLLRRMGERVGQEEMAALLHMSLRTLRRRLAEEGTSYRGLCSQTYGELAEELLAGGLTVEDVAYRMGYAGAPSFST
AFKQWRGISPGHFARAVAPRRGATAPGRRQISITESATTRPPSRTQPSESHSVNSCEPAPWVILRP
>Mature_385_residues
TAMTWEWRRTVGLSAVLVEVAAEHGLGVRACLRGTGIDPALLNTPDGEVTAAQELALVRNIVTALGDPPGLGLAAGARTH
VTSYGALGLALLASPTVRSAVDLLMRYIRMTTTFARIWHVYRDDELHLYADDSDVPAELRGFLLERDVTVLLANWAAVYH
APAPVLRGSVSGGLRPRLQPLIDEYGLDCVDGVGPHLVVFDTSGFEDPLPQASPLTARLFEQQCAQLLHRRGLRHGIAGT
VREVLLRRMGERVGQEEMAALLHMSLRTLRRRLAEEGTSYRGLCSQTYGELAEELLAGGLTVEDVAYRMGYAGAPSFSTA
FKQWRGISPGHFARAVAPRRGATAPGRRQISITESATTRPPSRTQPSESHSVNSCEPAPWVILRP

Specific function: Induces The Synthesis Of Acid Phosphatase (Appa) And Several Other Polypeptides (Such As Appbc) During The Deceleration Phase Of Growth. It Also Acts As A Transcriptional Repressor For One Group Of Proteins That Are Synthesized Preferentially In Exponenti

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 41923; Mature: 41792

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAMTWEWRRTVGLSAVLVEVAAEHGLGVRACLRGTGIDPALLNTPDGEVTAAQELALVR
CCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
NIVTALGDPPGLGLAAGARTHVTSYGALGLALLASPTVRSAVDLLMRYIRMTTTFARIWH
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
VYRDDELHLYADDSDVPAELRGFLLERDVTVLLANWAAVYHAPAPVLRGSVSGGLRPRLQ
HHCCCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHH
PLIDEYGLDCVDGVGPHLVVFDTSGFEDPLPQASPLTARLFEQQCAQLLHRRGLRHGIAG
HHHHHHCCCHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH
TVREVLLRRMGERVGQEEMAALLHMSLRTLRRRLAEEGTSYRGLCSQTYGELAEELLAGG
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
LTVEDVAYRMGYAGAPSFSTAFKQWRGISPGHFARAVAPRRGATAPGRRQISITESATTR
CCHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCCC
PPSRTQPSESHSVNSCEPAPWVILRP
CCCCCCCCCCCCCCCCCCCCEEEECC
>Mature Secondary Structure 
TAMTWEWRRTVGLSAVLVEVAAEHGLGVRACLRGTGIDPALLNTPDGEVTAAQELALVR
CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
NIVTALGDPPGLGLAAGARTHVTSYGALGLALLASPTVRSAVDLLMRYIRMTTTFARIWH
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
VYRDDELHLYADDSDVPAELRGFLLERDVTVLLANWAAVYHAPAPVLRGSVSGGLRPRLQ
HHCCCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHH
PLIDEYGLDCVDGVGPHLVVFDTSGFEDPLPQASPLTARLFEQQCAQLLHRRGLRHGIAG
HHHHHHCCCHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH
TVREVLLRRMGERVGQEEMAALLHMSLRTLRRRLAEEGTSYRGLCSQTYGELAEELLAGG
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
LTVEDVAYRMGYAGAPSFSTAFKQWRGISPGHFARAVAPRRGATAPGRRQISITESATTR
CCHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCCC
PPSRTQPSESHSVNSCEPAPWVILRP
CCCCCCCCCCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036; 12368430 [H]