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The map label for this gene is sigD [H]

Identifier: 54025718

GI number: 54025718

Start: 3968150

End: 3968773

Strand: Reverse

Name: sigD [H]

Synonym: nfa37480

Alternate gene names: 54025718

Gene position: 3968773-3968150 (Counterclockwise)

Preceding gene: 54025719

Following gene: 54025715

Centisome position: 65.91

GC content: 73.56

Gene sequence:

>624_bases
ATGGCTACCGAACACCAGACCGCCACCCACAGCTCCGCGAGCCCCGCGCTGACCGAGAGCCGTCGCGTCGCCGCCGAGGT
GGAGCAGCTGATCGGCCCCGCCGCCGCCGGTGACCAGCGCGCGGTCTCCGACATCCTGCGGGCCGTGCACCCGCTGGTGC
GCCGCTACTGCGGCGCCCGCCTCGGCAACACCGCGCACCTGCAGGTCACCGCCGACGACGTGGTGCAGGAGGTGCTGCTG
GCCACCGTGAAGGCCATCCCGCGCTACCGCGATCAGGGCAAGTCGTTCCTGGCCTTCGTCTACGGCATCGCCGCCAACAA
GGTCGCCGACGCGTTCCGCCGCTCGCAGGTGCACCCCGCCTACCCGATGGCCGAGGTGCCCGACGCCGCGTCCCCGGAGG
CCGGCCCGGAGGAGTGGGCGCTGGCGCTCGAGCGTCGCGCCGCCACCCGGGAACTGATGAAGGTGCTCGCGCCCGCGCAC
CGCGAGGTGCTGGTGATGCGGATCGTGCTCGGCTGGTCGGCGGCACAGACCGCCGAGGCCATCGGCACCAGCCCGGGCGT
GGTGCGGGTGATGCAGCATCGCGCGCTGAACAAGCTGCGCGCCCAGCTCGAACTCGCGGCGTGA

Upstream 100 bases:

>100_bases
TGGGACCCACCCTGGGGTGCCTGGTCGCTCGACCCGGTTCATCAGACGATCGTTCTCGACACCGAAAACGTGAACGATCG
CCAGAGATTGGACCGGACAG

Downstream 100 bases:

>100_bases
GCGCGGACGGCCCGCGCGCAGCAGCCGTATCGGGGTGTTACGGCTTGATGCCGTGGTCGGCCAGCGCGACCCGCAGATCC
TCCTCGGCCTCCACCGAGGT

Product: RNA polymerase sigma factor SigD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MATEHQTATHSSASPALTESRRVAAEVEQLIGPAAAGDQRAVSDILRAVHPLVRRYCGARLGNTAHLQVTADDVVQEVLL
ATVKAIPRYRDQGKSFLAFVYGIAANKVADAFRRSQVHPAYPMAEVPDAASPEAGPEEWALALERRAATRELMKVLAPAH
REVLVMRIVLGWSAAQTAEAIGTSPGVVRVMQHRALNKLRAQLELAA

Sequences:

>Translated_207_residues
MATEHQTATHSSASPALTESRRVAAEVEQLIGPAAAGDQRAVSDILRAVHPLVRRYCGARLGNTAHLQVTADDVVQEVLL
ATVKAIPRYRDQGKSFLAFVYGIAANKVADAFRRSQVHPAYPMAEVPDAASPEAGPEEWALALERRAATRELMKVLAPAH
REVLVMRIVLGWSAAQTAEAIGTSPGVVRVMQHRALNKLRAQLELAA
>Mature_206_residues
ATEHQTATHSSASPALTESRRVAAEVEQLIGPAAAGDQRAVSDILRAVHPLVRRYCGARLGNTAHLQVTADDVVQEVLLA
TVKAIPRYRDQGKSFLAFVYGIAANKVADAFRRSQVHPAYPMAEVPDAASPEAGPEEWALALERRAATRELMKVLAPAHR
EVLVMRIVLGWSAAQTAEAIGTSPGVVRVMQHRALNKLRAQLELAA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22324; Mature: 22193

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATEHQTATHSSASPALTESRRVAAEVEQLIGPAAAGDQRAVSDILRAVHPLVRRYCGAR
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LGNTAHLQVTADDVVQEVLLATVKAIPRYRDQGKSFLAFVYGIAANKVADAFRRSQVHPA
CCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
YPMAEVPDAASPEAGPEEWALALERRAATRELMKVLAPAHREVLVMRIVLGWSAAQTAEA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
IGTSPGVVRVMQHRALNKLRAQLELAA
HCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ATEHQTATHSSASPALTESRRVAAEVEQLIGPAAAGDQRAVSDILRAVHPLVRRYCGAR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LGNTAHLQVTADDVVQEVLLATVKAIPRYRDQGKSFLAFVYGIAANKVADAFRRSQVHPA
CCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
YPMAEVPDAASPEAGPEEWALALERRAATRELMKVLAPAHREVLVMRIVLGWSAAQTAEA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
IGTSPGVVRVMQHRALNKLRAQLELAA
HCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]