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The map label for this gene is nodD2 [H]

Identifier: 54025696

GI number: 54025696

Start: 3944942

End: 3945859

Strand: Reverse

Name: nodD2 [H]

Synonym: nfa37260

Alternate gene names: 54025696

Gene position: 3945859-3944942 (Counterclockwise)

Preceding gene: 54025697

Following gene: 54025693

Centisome position: 65.53

GC content: 77.23

Gene sequence:

>918_bases
GTGGCGCCCCTCGACCTCAACCTTCTGGTTGCTCTCGATTCGCTGCTGGACACCGGCAGCGTGACCGAGGCGGCGCGCCG
GCTGCACACCTCGCCGTCGGCGATGAGCCGCACGCTGGCCCGGTTGCGGCGGCTGCTCGACGATCCGCTGCTGGTGCGGT
CGGGCCGCCACCTGGTGCCCACCCCGCGCGCACTGGCCCTGCGGCCGGAGGTGGCGGCGCTGGTCGAGCACGGCCGCGCG
GTGCTCGCGCCGCGCGGGCGGGTCGACCCCGCCACCCTCGCTCGCGGTTTCGCCGTGCGCGCCGACGACCTCGTGCTCGC
CCGGCTCGCCGGACCGCTGGTGCGTGCGGTGCGCGCCCACGCGCCCGGCGTCACGATCCGCTTCCTGCCCGACGCCGGGA
AGGGGGCGGCCGACCTGCGCGACGGCCGGGCGGATCTGGCGGTCGGCGTGCTCGAACCGGCCGATCCGGAGATCGTCGTC
CATCGCGTCTTCGGCGATCGGCTGGTCGGCGTGGTCGCGCCCGGTCATCCGCTGGACGCCGACCGCGTCACCGTCGCCGC
CTACGCGGGCGCCGCCCATCTGGCGGTGACCCGGCAGGGCCGCCCGCGCGGCCCCATCGACGACCGGCTCGCCCTGCACG
GGCGCACCCGCCGCGTCGTCGCCACCGTCCCCGACCTGCCGTCGGCGCTGCTCGCGGTGCGTGGTGGCGAGCTTGTCTGC
CCGGCACCGGCGCACCTGGCCGCCGACGCGGTGGCGGCGCTCGGCCTCGCCACGTTCGAGATCCCGCTCCCGCTCCCCGA
GATCCCGGTCGGCCTGACCTGGCACTCCCGCAACACCGCCGACGCCGCCCACCGCTGGCTGCGCGAACTCGTCGAAACCC
TGCTGGCGCCACCGGATCCGGGCCGACGACGCCGCTGA

Upstream 100 bases:

>100_bases
CTGATCAAGTTGCTGTTGGCGCATCTGCAACCGGAGGGCGCCGCCGATTGCGCCGAGCGCAATGCCGGAGATCGATGATT
GCGTCTGTGATAATCCGGGA

Downstream 100 bases:

>100_bases
CCGCGCCGATTGCTCAGCGATTGCGGCGCGGCGGATCTCCGGGGGTGTCGAGCGCGTCCGCGTGCACGGCCACGAGCGCC
GCCTCCACCCGATTGCGGGC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MAPLDLNLLVALDSLLDTGSVTEAARRLHTSPSAMSRTLARLRRLLDDPLLVRSGRHLVPTPRALALRPEVAALVEHGRA
VLAPRGRVDPATLARGFAVRADDLVLARLAGPLVRAVRAHAPGVTIRFLPDAGKGAADLRDGRADLAVGVLEPADPEIVV
HRVFGDRLVGVVAPGHPLDADRVTVAAYAGAAHLAVTRQGRPRGPIDDRLALHGRTRRVVATVPDLPSALLAVRGGELVC
PAPAHLAADAVAALGLATFEIPLPLPEIPVGLTWHSRNTADAAHRWLRELVETLLAPPDPGRRRR

Sequences:

>Translated_305_residues
MAPLDLNLLVALDSLLDTGSVTEAARRLHTSPSAMSRTLARLRRLLDDPLLVRSGRHLVPTPRALALRPEVAALVEHGRA
VLAPRGRVDPATLARGFAVRADDLVLARLAGPLVRAVRAHAPGVTIRFLPDAGKGAADLRDGRADLAVGVLEPADPEIVV
HRVFGDRLVGVVAPGHPLDADRVTVAAYAGAAHLAVTRQGRPRGPIDDRLALHGRTRRVVATVPDLPSALLAVRGGELVC
PAPAHLAADAVAALGLATFEIPLPLPEIPVGLTWHSRNTADAAHRWLRELVETLLAPPDPGRRRR
>Mature_304_residues
APLDLNLLVALDSLLDTGSVTEAARRLHTSPSAMSRTLARLRRLLDDPLLVRSGRHLVPTPRALALRPEVAALVEHGRAV
LAPRGRVDPATLARGFAVRADDLVLARLAGPLVRAVRAHAPGVTIRFLPDAGKGAADLRDGRADLAVGVLEPADPEIVVH
RVFGDRLVGVVAPGHPLDADRVTVAAYAGAAHLAVTRQGRPRGPIDDRLALHGRTRRVVATVPDLPSALLAVRGGELVCP
APAHLAADAVAALGLATFEIPLPLPEIPVGLTWHSRNTADAAHRWLRELVETLLAPPDPGRRRR

Specific function: NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=289, Percent_Identity=25.6055363321799, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1790147, Length=299, Percent_Identity=24.7491638795987, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87081766, Length=194, Percent_Identity=26.8041237113402, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87082024, Length=187, Percent_Identity=32.620320855615, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32342; Mature: 32211

Theoretical pI: Translated: 11.58; Mature: 11.58

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPLDLNLLVALDSLLDTGSVTEAARRLHTSPSAMSRTLARLRRLLDDPLLVRSGRHLVP
CCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEECCCCCCCC
TPRALALRPEVAALVEHGRAVLAPRGRVDPATLARGFAVRADDLVLARLAGPLVRAVRAH
CCCCEEECHHHHHHHHCCCEEECCCCCCCHHHHHCCCEECCHHHHHHHHHHHHHHHHHHC
APGVTIRFLPDAGKGAADLRDGRADLAVGVLEPADPEIVVHRVFGDRLVGVVAPGHPLDA
CCCCEEEECCCCCCCCHHHCCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCC
DRVTVAAYAGAAHLAVTRQGRPRGPIDDRLALHGRTRRVVATVPDLPSALLAVRGGELVC
CCEEEEEECCCEEEEEECCCCCCCCCCCHHEECCCCCEEEEECCCCHHHHHHHCCCCEEC
PAPAHLAADAVAALGLATFEIPLPLPEIPVGLTWHSRNTADAAHRWLRELVETLLAPPDP
CCCHHHHHHHHHHHHHHEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCC
GRRRR
CCCCC
>Mature Secondary Structure 
APLDLNLLVALDSLLDTGSVTEAARRLHTSPSAMSRTLARLRRLLDDPLLVRSGRHLVP
CCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEECCCCCCCC
TPRALALRPEVAALVEHGRAVLAPRGRVDPATLARGFAVRADDLVLARLAGPLVRAVRAH
CCCCEEECHHHHHHHHCCCEEECCCCCCCHHHHHCCCEECCHHHHHHHHHHHHHHHHHHC
APGVTIRFLPDAGKGAADLRDGRADLAVGVLEPADPEIVVHRVFGDRLVGVVAPGHPLDA
CCCCEEEECCCCCCCCHHHCCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCC
DRVTVAAYAGAAHLAVTRQGRPRGPIDDRLALHGRTRRVVATVPDLPSALLAVRGGELVC
CCEEEEEECCCEEEEEECCCCCCCCCCCHHEECCCCCEEEEECCCCHHHHHHHCCCCEEC
PAPAHLAADAVAALGLATFEIPLPLPEIPVGLTWHSRNTADAAHRWLRELVETLLAPPDP
CCCHHHHHHHHHHHHHHEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCC
GRRRR
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2826389 [H]