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The map label for this gene is nusB

Identifier: 54025601

GI number: 54025601

Start: 3842540

End: 3843049

Strand: Reverse

Name: nusB

Synonym: nfa36310

Alternate gene names: 54025601

Gene position: 3843049-3842540 (Counterclockwise)

Preceding gene: 54025602

Following gene: 54025600

Centisome position: 63.83

GC content: 72.75

Gene sequence:

>510_bases
GTGGCCGAACAGCCCGCGGACAAGAAGTCCACGTTCAAGAAGCTCGGCGCCCGGCACAAGGCCCGGCGGCGCGCGGTGGA
TCTGTTGTTCGAGGCGGAGGCCCGCGACGTCGACGCCGCGGACCTGCTGACCGAGCGCGCCGATCTGGCCACCCGGGACC
AGTCGGTCGCCCCGCTGCACGCCTACACCCGCACCCTGGTGGAGGGCGTGGCCGACGAGCTCGAGCGCGTCGACGGCACC
ATCGAGTCCTATCTGCAGGACTGGACGCTGTCGCGGTTGCCCGCCGTCGACCGGGCGATTCTGCGGGTGGCGGTGTGGGA
GCTGTTCCACGCCACCGATGTGCCGCCGGTGGTGGCCGTCGACGAGGCGGTGGAGCTGGCCAAGGAGCTGTCCACAGACG
ACTCGCCGTCGTTCGTCAACGGGGTGCTCGGCCAGGTCGTGCTGGTGGCACCGCAGGTGCGCGCCGCGGCGGCGGCGACC
AGGGCGCCGCGGCAGGAGCCCGAGGCGTGA

Upstream 100 bases:

>100_bases
CGGGTCAACGCCTGATCCACGACCTCCGCGGCGGTAGCCGGATTCGCCCGTGGGCGGGACCGGCTACCGCTTCCATGCGT
ACAGACGGGATGATGTGACT

Downstream 100 bases:

>100_bases
CCAAATATCTCGTGCTGGCGATGCGCACGCCGCGCTACACCGACGCGGTGATCGAACCGCACCGACAGTTCCTGCGCGAG
CTGCTCGATGGCGGCCGGCT

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MAEQPADKKSTFKKLGARHKARRRAVDLLFEAEARDVDAADLLTERADLATRDQSVAPLHAYTRTLVEGVADELERVDGT
IESYLQDWTLSRLPAVDRAILRVAVWELFHATDVPPVVAVDEAVELAKELSTDDSPSFVNGVLGQVVLVAPQVRAAAAAT
RAPRQEPEA

Sequences:

>Translated_169_residues
MAEQPADKKSTFKKLGARHKARRRAVDLLFEAEARDVDAADLLTERADLATRDQSVAPLHAYTRTLVEGVADELERVDGT
IESYLQDWTLSRLPAVDRAILRVAVWELFHATDVPPVVAVDEAVELAKELSTDDSPSFVNGVLGQVVLVAPQVRAAAAAT
RAPRQEPEA
>Mature_168_residues
AEQPADKKSTFKKLGARHKARRRAVDLLFEAEARDVDAADLLTERADLATRDQSVAPLHAYTRTLVEGVADELERVDGTI
ESYLQDWTLSRLPAVDRAILRVAVWELFHATDVPPVVAVDEAVELAKELSTDDSPSFVNGVLGQVVLVAPQVRAAAAATR
APRQEPEA

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=93, Percent_Identity=44.0860215053763, Blast_Score=73, Evalue=9e-15,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_NOCFA (Q5YTL2)

Other databases:

- EMBL:   AP006618
- RefSeq:   YP_119843.1
- HSSP:   P95020
- ProteinModelPortal:   Q5YTL2
- SMR:   Q5YTL2
- GeneID:   3111353
- GenomeReviews:   AP006618_GR
- KEGG:   nfa:nfa36310
- NMPDR:   fig|247156.1.peg.3544
- HOGENOM:   HBG734409
- OMA:   DDSPSFV
- ProtClustDB:   PRK00202
- BioCyc:   NFAR247156:NFA36310-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 18464; Mature: 18333

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEQPADKKSTFKKLGARHKARRRAVDLLFEAEARDVDAADLLTERADLATRDQSVAPLH
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHH
AYTRTLVEGVADELERVDGTIESYLQDWTLSRLPAVDRAILRVAVWELFHATDVPPVVAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHH
DEAVELAKELSTDDSPSFVNGVLGQVVLVAPQVRAAAAATRAPRQEPEA
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
AEQPADKKSTFKKLGARHKARRRAVDLLFEAEARDVDAADLLTERADLATRDQSVAPLH
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHH
AYTRTLVEGVADELERVDGTIESYLQDWTLSRLPAVDRAILRVAVWELFHATDVPPVVAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHH
DEAVELAKELSTDDSPSFVNGVLGQVVLVAPQVRAAAAATRAPRQEPEA
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA