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The map label for this gene is sufB [H]

Identifier: 54025530

GI number: 54025530

Start: 3768070

End: 3769527

Strand: Reverse

Name: sufB [H]

Synonym: nfa35600

Alternate gene names: 54025530

Gene position: 3769527-3768070 (Counterclockwise)

Preceding gene: 54025531

Following gene: 54025529

Centisome position: 62.6

GC content: 66.05

Gene sequence:

>1458_bases
ATGACGACGACCGCAGCGGCAGGCCGCGAAGCCGCCACCCAGGTACCGCCTTTGACCCAGGAAGAGACGATCGCCTCGCT
GGGCAAGTACGGCTACGGCTGGGCCGATCCGGACGCGGCGGGTGCCGCCGCGCAGCGCGGCCTGTCCGAGGACGTCGTGC
GCGACATCTCGGCGAAGAAGAACGAGCCCGAGTGGATGCTCGAGCAGCGGCTCAAGGCGCTGCGGATCTTCGACCGCAAG
CCGATGCCGAACTGGGGTTCCAACCTCGAGGGCATCGACTTCGACAACATCAAGTACTTCGTGCGCTCGACCGAGAAGCA
GGCCGCGTCCTGGGACGAGCTGCCCGAGGACATCAAGAACACCTACGACAAGCTGGGCATCCCGGAGGCGGAGAAGCAGC
GGCTGGTCGCCGGTGTCGCCGCGCAGTACGAGTCCGAGGTCGTCTACCACCAGATCCGCGAGGACCTCGAGGCCCAGGGC
GTGATCTTCCTCGACACCGACACCGGTCTCAAGGAGCACCCGGAGATCTTCCAGGAGTACTTCGGCTCGGTGATCCCGGC
CGGTGACAACAAGTTCTCCGCGCTCAACACCGCCGTGTGGTCGGGTGGCTCGTTCATCTACGTGCCGCCGGGCGTGCACG
TCGACATCCCGCTGCAGGCCTACTTCCGGATCAACACCGAGAACATGGGCCAGTTCGAGCGGACCCTGATCATCGTCGAC
GAGGGCGCCTACGTGCACTACGTCGAGGGCTGCACCGCGCCGATCTACAAGTCCGACTCGCTGCACTCGGCGGTCGTGGA
GATCATCGTGAAGAAGGGCGGCCGCTGCCGCTACACGACCATCCAGAACTGGTCGAACAACGTCTACAACCTGGTCACCA
AGCGGGCCAAGGCGGAGGCGGGCGCGACCATGGAGTGGATCGACGGCAACATCGGCTCCAAGGTCACCATGAAGTACCCG
GCGGTCTGGATGACCGGTGAGCACGCCAAGGGCGAGGTGCTCTCGGTGGCCTTCGCCGGCGAGGGCCAGCACCAGGACAC
CGGCGCGAAGATGCTGCACCTGGCGCCGCACACCTCCTCGACCATCGTGTCGAAGTCGGTGGCGCGCGGCGGCGGCCGGG
CCTCCTACCGCGGCCTGGTCCAGGTGAACAAGGGCGCCTACGGCTCCAAGTCGACGGTCAAGTGCGATGCGCTGCTGGTC
GACACCATCAGCCGCTCCGACACCTACCCCTACGTCGACATCCGCGAGGACGACGTGACGATGGGGCACGAGGCCACCGT
CTCCAAGGTCTCCGAGGACCAGCTGTTCTACCTGATGAGCCGCGGCCTCACCGAGGACGAGGCGATGGCGATGGTGGTGC
GCGGCTTCGTCGAGCCGATCGCCAAGGAACTCCCGATGGAGTACGCGCTGGAACTCAACCGCCTGATCGAACTGCAGATG
GAAGGGGCCGTCGGCTGA

Upstream 100 bases:

>100_bases
GCGCCACGAAAACCCCCACCGCCCCCACGAAGACAGCCTCTCCCCGAACCGTCGCACAGCCCGCGGCGGCAGGAACGAAC
GACTCCGGAAGGAGTGCCGA

Downstream 100 bases:

>100_bases
TGACCGAGCTCGAATCGACCACCGGGGCGGCCTCCGTGGCCGAGGCGGCCGAGGCACGGACGCCTGCCATCAACAAGGGC
GAGGTGTTCACCTCCTTCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 485; Mature: 484

Protein sequence:

>485_residues
MTTTAAAGREAATQVPPLTQEETIASLGKYGYGWADPDAAGAAAQRGLSEDVVRDISAKKNEPEWMLEQRLKALRIFDRK
PMPNWGSNLEGIDFDNIKYFVRSTEKQAASWDELPEDIKNTYDKLGIPEAEKQRLVAGVAAQYESEVVYHQIREDLEAQG
VIFLDTDTGLKEHPEIFQEYFGSVIPAGDNKFSALNTAVWSGGSFIYVPPGVHVDIPLQAYFRINTENMGQFERTLIIVD
EGAYVHYVEGCTAPIYKSDSLHSAVVEIIVKKGGRCRYTTIQNWSNNVYNLVTKRAKAEAGATMEWIDGNIGSKVTMKYP
AVWMTGEHAKGEVLSVAFAGEGQHQDTGAKMLHLAPHTSSTIVSKSVARGGGRASYRGLVQVNKGAYGSKSTVKCDALLV
DTISRSDTYPYVDIREDDVTMGHEATVSKVSEDQLFYLMSRGLTEDEAMAMVVRGFVEPIAKELPMEYALELNRLIELQM
EGAVG

Sequences:

>Translated_485_residues
MTTTAAAGREAATQVPPLTQEETIASLGKYGYGWADPDAAGAAAQRGLSEDVVRDISAKKNEPEWMLEQRLKALRIFDRK
PMPNWGSNLEGIDFDNIKYFVRSTEKQAASWDELPEDIKNTYDKLGIPEAEKQRLVAGVAAQYESEVVYHQIREDLEAQG
VIFLDTDTGLKEHPEIFQEYFGSVIPAGDNKFSALNTAVWSGGSFIYVPPGVHVDIPLQAYFRINTENMGQFERTLIIVD
EGAYVHYVEGCTAPIYKSDSLHSAVVEIIVKKGGRCRYTTIQNWSNNVYNLVTKRAKAEAGATMEWIDGNIGSKVTMKYP
AVWMTGEHAKGEVLSVAFAGEGQHQDTGAKMLHLAPHTSSTIVSKSVARGGGRASYRGLVQVNKGAYGSKSTVKCDALLV
DTISRSDTYPYVDIREDDVTMGHEATVSKVSEDQLFYLMSRGLTEDEAMAMVVRGFVEPIAKELPMEYALELNRLIELQM
EGAVG
>Mature_484_residues
TTTAAAGREAATQVPPLTQEETIASLGKYGYGWADPDAAGAAAQRGLSEDVVRDISAKKNEPEWMLEQRLKALRIFDRKP
MPNWGSNLEGIDFDNIKYFVRSTEKQAASWDELPEDIKNTYDKLGIPEAEKQRLVAGVAAQYESEVVYHQIREDLEAQGV
IFLDTDTGLKEHPEIFQEYFGSVIPAGDNKFSALNTAVWSGGSFIYVPPGVHVDIPLQAYFRINTENMGQFERTLIIVDE
GAYVHYVEGCTAPIYKSDSLHSAVVEIIVKKGGRCRYTTIQNWSNNVYNLVTKRAKAEAGATMEWIDGNIGSKVTMKYPA
VWMTGEHAKGEVLSVAFAGEGQHQDTGAKMLHLAPHTSSTIVSKSVARGGGRASYRGLVQVNKGAYGSKSTVKCDALLVD
TISRSDTYPYVDIREDDVTMGHEATVSKVSEDQLFYLMSRGLTEDEAMAMVVRGFVEPIAKELPMEYALELNRLIELQME
GAVG

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI87081955, Length=462, Percent_Identity=39.6103896103896, Blast_Score=374, Evalue=1e-104,
Organism=Escherichia coli, GI1787971, Length=154, Percent_Identity=27.2727272727273, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010231
- InterPro:   IPR000825 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 53491; Mature: 53360

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTAAAGREAATQVPPLTQEETIASLGKYGYGWADPDAAGAAAQRGLSEDVVRDISAKK
CCCCCCCCCHHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCC
NEPEWMLEQRLKALRIFDRKPMPNWGSNLEGIDFDNIKYFVRSTEKQAASWDELPEDIKN
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHCCHHHHHHHHHH
TYDKLGIPEAEKQRLVAGVAAQYESEVVYHQIREDLEAQGVIFLDTDTGLKEHPEIFQEY
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHH
FGSVIPAGDNKFSALNTAVWSGGSFIYVPPGVHVDIPLQAYFRINTENMGQFERTLIIVD
HCCEECCCCCCHHHHHHHEECCCCEEEECCCCEEEECEEEEEEECCCCCCCEEEEEEEEE
EGAYVHYVEGCTAPIYKSDSLHSAVVEIIVKKGGRCRYTTIQNWSNNVYNLVTKRAKAEA
CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHC
GATMEWIDGNIGSKVTMKYPAVWMTGEHAKGEVLSVAFAGEGQHQDTGAKMLHLAPHTSS
CCEEEEECCCCCCEEEEECCEEEEECCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCH
TIVSKSVARGGGRASYRGLVQVNKGAYGSKSTVKCDALLVDTISRSDTYPYVDIREDDVT
HHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEEHHCCCCCCCEEEECCCCCC
MGHEATVSKVSEDQLFYLMSRGLTEDEAMAMVVRGFVEPIAKELPMEYALELNRLIELQM
CCCHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEEEE
EGAVG
CCCCC
>Mature Secondary Structure 
TTTAAAGREAATQVPPLTQEETIASLGKYGYGWADPDAAGAAAQRGLSEDVVRDISAKK
CCCCCCCCHHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCC
NEPEWMLEQRLKALRIFDRKPMPNWGSNLEGIDFDNIKYFVRSTEKQAASWDELPEDIKN
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHCCHHHHHHHHHH
TYDKLGIPEAEKQRLVAGVAAQYESEVVYHQIREDLEAQGVIFLDTDTGLKEHPEIFQEY
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHH
FGSVIPAGDNKFSALNTAVWSGGSFIYVPPGVHVDIPLQAYFRINTENMGQFERTLIIVD
HCCEECCCCCCHHHHHHHEECCCCEEEECCCCEEEECEEEEEEECCCCCCCEEEEEEEEE
EGAYVHYVEGCTAPIYKSDSLHSAVVEIIVKKGGRCRYTTIQNWSNNVYNLVTKRAKAEA
CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHC
GATMEWIDGNIGSKVTMKYPAVWMTGEHAKGEVLSVAFAGEGQHQDTGAKMLHLAPHTSS
CCEEEEECCCCCCEEEEECCEEEEECCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCH
TIVSKSVARGGGRASYRGLVQVNKGAYGSKSTVKCDALLVDTISRSDTYPYVDIREDDVT
HHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEEHHCCCCCCCEEEECCCCCC
MGHEATVSKVSEDQLFYLMSRGLTEDEAMAMVVRGFVEPIAKELPMEYALELNRLIELQM
CCCHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEEEE
EGAVG
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]