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The map label for this gene is scoF [H]

Identifier: 54025407

GI number: 54025407

Start: 3641492

End: 3641695

Strand: Reverse

Name: scoF [H]

Synonym: nfa34370

Alternate gene names: 54025407

Gene position: 3641695-3641492 (Counterclockwise)

Preceding gene: 54025408

Following gene: 54025405

Centisome position: 60.48

GC content: 63.73

Gene sequence:

>204_bases
ATGGCTCAAGGCAGCGTGAAGTGGTTCAACGGCGAGAAGGGCTTCGGCTTCATCGCCCAAGACGGAGGCGGTCCTGACGT
CTTCGTGCATTACTCGGCCATCGGTGGCTCGGGTTTCAAGACCCTCGATGAGGGGCAGCGCGTGGAGTTCGAGATCGGGC
AGGGCCAGAAGGGCCCGCAGGCTCAGGACGTCCGCGCCATCTGA

Upstream 100 bases:

>100_bases
CACTCTGGCCCGTTCATCGCTCCCATGTGGAAGAGTGGTCGTGGAGACCGGGTTTTCGCAGTGTTTTCCCGGCTCGTCTA
CAGAAAAGATCGAAATCAGC

Downstream 100 bases:

>100_bases
TCGAGCGTGACGTGTTGGCTCCGCACCGCAACGGTGCGGAGCCTTTTCGTTCGTCCGGCCACGATCGGTCCCGACCTGAT
CGTGTGCGTCGCCGCGGCGC

Product: putative cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MAQGSVKWFNGEKGFGFIAQDGGGPDVFVHYSAIGGSGFKTLDEGQRVEFEIGQGQKGPQAQDVRAI

Sequences:

>Translated_67_residues
MAQGSVKWFNGEKGFGFIAQDGGGPDVFVHYSAIGGSGFKTLDEGQRVEFEIGQGQKGPQAQDVRAI
>Mature_66_residues
AQGSVKWFNGEKGFGFIAQDGGGPDVFVHYSAIGGSGFKTLDEGQRVEFEIGQGQKGPQAQDVRAI

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=65, Percent_Identity=64.6153846153846, Blast_Score=87, Evalue=2e-19,
Organism=Escherichia coli, GI1788126, Length=65, Percent_Identity=67.6923076923077, Blast_Score=86, Evalue=4e-19,
Organism=Escherichia coli, GI2367114, Length=64, Percent_Identity=57.8125, Blast_Score=83, Evalue=3e-18,
Organism=Escherichia coli, GI1789979, Length=65, Percent_Identity=58.4615384615385, Blast_Score=81, Evalue=1e-17,
Organism=Escherichia coli, GI1787834, Length=64, Percent_Identity=60.9375, Blast_Score=76, Evalue=3e-16,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=50.7462686567164, Blast_Score=75, Evalue=7e-16,
Organism=Escherichia coli, GI1787839, Length=62, Percent_Identity=56.4516129032258, Blast_Score=74, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71983225, Length=55, Percent_Identity=49.0909090909091, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71983217, Length=55, Percent_Identity=49.0909090909091, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7104; Mature: 6973

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQGSVKWFNGEKGFGFIAQDGGGPDVFVHYSAIGGSGFKTLDEGQRVEFEIGQGQKGPQ
CCCCCEEEECCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCC
AQDVRAI
CCCEECC
>Mature Secondary Structure 
AQGSVKWFNGEKGFGFIAQDGGGPDVFVHYSAIGGSGFKTLDEGQRVEFEIGQGQKGPQ
CCCCEEEECCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCC
AQDVRAI
CCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12000953 [H]