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The map label for this gene is rplI

Identifier: 54020646

GI number: 54020646

Start: 838051

End: 838488

Strand: Reverse

Name: rplI

Synonym: mhp665

Alternate gene names: 54020646

Gene position: 838488-838051 (Counterclockwise)

Preceding gene: 54020647

Following gene: 54020645

Centisome position: 93.92

GC content: 29.0

Gene sequence:

>438_bases
ATGAAAGTAATCCTAATTAAAGATACAAAAGATGGAAAAGCGAATACAATTATCGATGTTTCCCCTGGCTATGCCACTAA
TTTTTTATTCAAGAATAAGTTAGCCGAGCCCCTAAATTCCCGAACAGAAAAACTTTTAGTTAAAAGAAAACAGCAAATTG
AGATCGAAAAACAAGAAAAACAAGAACAAATTGCCAAACTAAAAATCGAAATTGAAAGGCTAGTTCTCTGGTTTAAATTA
AAGGGAAATAAAGAATCAGTTCATGGGGCAATTACAGCGAAAAAAATTAAAAAAGAACTTGAAATTAAAGGAATTTTTGT
TGATAAACAAGCAATCCAAACAAGTGGAATTTCCACTTTTGGCACTAGTTTTGTTGATATAAAATTAAGTTCTCAAACTA
TTGCTAAATTAAAAATAAATATCACAAAAGATGAATAA

Upstream 100 bases:

>100_bases
GGCGGGGGCGGTAGTTTTAACTCCGCAGCCGCTTATTCAACAGTTGAGACTTTTTCTGAATTTGTCAATAATATCAAACT
AGCAATTAAAAGGAGAGAAT

Downstream 100 bases:

>100_bases
TTCTCGTTATAATTCTCCTGAACTTGAAGCATTTATCATCTCTTTTCTTTTAGCAAATCCTGAAAAAGTTGTTAATTTTA
TTGACATACTTAATCCAGAT

Product: 50S ribosomal protein L9

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MKVILIKDTKDGKANTIIDVSPGYATNFLFKNKLAEPLNSRTEKLLVKRKQQIEIEKQEKQEQIAKLKIEIERLVLWFKL
KGNKESVHGAITAKKIKKELEIKGIFVDKQAIQTSGISTFGTSFVDIKLSSQTIAKLKINITKDE

Sequences:

>Translated_145_residues
MKVILIKDTKDGKANTIIDVSPGYATNFLFKNKLAEPLNSRTEKLLVKRKQQIEIEKQEKQEQIAKLKIEIERLVLWFKL
KGNKESVHGAITAKKIKKELEIKGIFVDKQAIQTSGISTFGTSFVDIKLSSQTIAKLKINITKDE
>Mature_145_residues
MKVILIKDTKDGKANTIIDVSPGYATNFLFKNKLAEPLNSRTEKLLVKRKQQIEIEKQEKQEQIAKLKIEIERLVLWFKL
KGNKESVHGAITAKKIKKELEIKGIFVDKQAIQTSGISTFGTSFVDIKLSSQTIAKLKINITKDE

Specific function: Binds to the 23S rRNA

COG id: COG0359

COG function: function code J; Ribosomal protein L9

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L9P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL9_MYCH2 (Q5ZZP2)

Other databases:

- EMBL:   AE017332
- RefSeq:   YP_116173.1
- HSSP:   P02417
- ProteinModelPortal:   Q5ZZP2
- SMR:   Q5ZZP2
- STRING:   Q5ZZP2
- GeneID:   3105824
- GenomeReviews:   AE017332_GR
- KEGG:   mhy:mhp665
- eggNOG:   COG0359
- HOGENOM:   HBG586587
- OMA:   DGKANTI
- ProtClustDB:   PRK00137
- BioCyc:   MHYO295358:MHP665-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00503
- InterPro:   IPR000244
- InterPro:   IPR009027
- InterPro:   IPR020594
- InterPro:   IPR020069
- InterPro:   IPR020070
- Gene3D:   G3DSA:3.10.430.100
- Gene3D:   G3DSA:3.40.5.10
- PANTHER:   PTHR21368
- TIGRFAMs:   TIGR00158

Pfam domain/function: PF03948 Ribosomal_L9_C; PF01281 Ribosomal_L9_N; SSF55658 L9_N_like; SSF55653 Ribosomal_L9

EC number: NA

Molecular weight: Translated: 16455; Mature: 16455

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: PS00651 RIBOSOMAL_L9

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVILIKDTKDGKANTIIDVSPGYATNFLFKNKLAEPLNSRTEKLLVKRKQQIEIEKQEK
CEEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHH
QEQIAKLKIEIERLVLWFKLKGNKESVHGAITAKKIKKELEIKGIFVDKQAIQTSGISTF
HHHHHHHHHEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHEEEEEEECHHHHHHCCCCCC
GTSFVDIKLSSQTIAKLKINITKDE
CCEEEEEEECCCEEEEEEEEEECCC
>Mature Secondary Structure
MKVILIKDTKDGKANTIIDVSPGYATNFLFKNKLAEPLNSRTEKLLVKRKQQIEIEKQEK
CEEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHH
QEQIAKLKIEIERLVLWFKLKGNKESVHGAITAKKIKKELEIKGIFVDKQAIQTSGISTF
HHHHHHHHHEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHEEEEEEECHHHHHHCCCCCC
GTSFVDIKLSSQTIAKLKINITKDE
CCEEEEEEECCCEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA