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The map label for this gene is 53723357

Identifier: 53723357

GI number: 53723357

Start: 3156381

End: 3157229

Strand: Reverse

Name: 53723357

Synonym: BPSS2340

Alternate gene names: NA

Gene position: 3157229-3156381 (Counterclockwise)

Preceding gene: 53723359

Following gene: 53723356

Centisome position: 99.5

GC content: 69.38

Gene sequence:

>849_bases
TTGGCCGTTTCCAATCCCGTGGTGGACGATAACGAAACCGACGCCGCTGCCGTCACATCGGGCAGCTCTTTCTATCTCGC
GATGCGCATCCTGCCCGCGGAGCAGCGCGATGCGATGTTCCAGGTCTATGCGTTTTGCCGTGCGGTCGACGACATCGCCG
ACGAAGGCGGCGCGCGCGCGGAGCGCGCGGCGCAGCTCGACCGCTGGCGCGCCGACATCGATGATTGCTACGCGGGCAAG
CCGCGCGCGTCGCTCGTGCCGCTCGCGCGCGAGATCGGCAAGTTCGGCCTGCATCGCGACGACTTTCACGCGATGATCGA
CGGCATGGCGATGGACGCCGCCGAGGACATCTGCGCGCCCGACGAAGCCACGCTCGATCTGTACTGCGACCGCGTCGCGA
GCTCGGCCGGCCGGCTATCGGTGAGGATTTTCGGGATGCCGGACGAGCCCGGCCGCGTACTGTCGCATCATCTCGGCCGC
GCGCTGCAACTGACGAATATCCTGCGCGACATCGACGATGACGCGGCGATCAACCGTTGCTACCTGCCGCGCGAGCTGCT
CGCGCGCGAGGGCATCGCGATCGCCGATCCGCAGACGATCGCGCGCGATCCGTTGCTGCCGCGCGTGTGCGCGACGCTCG
TCGAGCGCGCACTGCACCATTTCGCGCAGGCCGACGCGGTGATGGACGCGTCGCCGCGCGCGCAGGTTCGTGCGCCGCGC
ATCATGTCGGGCGCGTATCGCCTGATTCTCGAAGCCGCGGTCGCGCGCGGCTTCGCGCCGCCGCGCGCGCCGCTGCGCAA
GCCGCGCGCGCGAATGCTGCTGCTCGCGGCGCGTTACGCGCTGTTTTGA

Upstream 100 bases:

>100_bases
TGTCTGCGCCGATCGTTCGCGCATCTCGCACGCATTTACCATCCCCAGCCGGGCATGGCTTCTTCAATCGCCCCGCGAGG
GCGCCTTAGCGGAGCTCGTC

Downstream 100 bases:

>100_bases
TTCGATGCGGGCGGTGCGCACCGGTCGGGCTGCGCCGCTCGAGACGCGGCGCGGCCCGCGCGCCGCATCGCCATCCGCCG
CACGCGGGCGGCGCCCGTCC

Product: squalene/phytoene synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MAVSNPVVDDNETDAAAVTSGSSFYLAMRILPAEQRDAMFQVYAFCRAVDDIADEGGARAERAAQLDRWRADIDDCYAGK
PRASLVPLAREIGKFGLHRDDFHAMIDGMAMDAAEDICAPDEATLDLYCDRVASSAGRLSVRIFGMPDEPGRVLSHHLGR
ALQLTNILRDIDDDAAINRCYLPRELLAREGIAIADPQTIARDPLLPRVCATLVERALHHFAQADAVMDASPRAQVRAPR
IMSGAYRLILEAAVARGFAPPRAPLRKPRARMLLLAARYALF

Sequences:

>Translated_282_residues
MAVSNPVVDDNETDAAAVTSGSSFYLAMRILPAEQRDAMFQVYAFCRAVDDIADEGGARAERAAQLDRWRADIDDCYAGK
PRASLVPLAREIGKFGLHRDDFHAMIDGMAMDAAEDICAPDEATLDLYCDRVASSAGRLSVRIFGMPDEPGRVLSHHLGR
ALQLTNILRDIDDDAAINRCYLPRELLAREGIAIADPQTIARDPLLPRVCATLVERALHHFAQADAVMDASPRAQVRAPR
IMSGAYRLILEAAVARGFAPPRAPLRKPRARMLLLAARYALF
>Mature_281_residues
AVSNPVVDDNETDAAAVTSGSSFYLAMRILPAEQRDAMFQVYAFCRAVDDIADEGGARAERAAQLDRWRADIDDCYAGKP
RASLVPLAREIGKFGLHRDDFHAMIDGMAMDAAEDICAPDEATLDLYCDRVASSAGRLSVRIFGMPDEPGRVLSHHLGRA
LQLTNILRDIDDDAAINRCYLPRELLAREGIAIADPQTIARDPLLPRVCATLVERALHHFAQADAVMDASPRAQVRAPRI
MSGAYRLILEAAVARGFAPPRAPLRKPRARMLLLAARYALF

Specific function: Catalyzes the reaction from prephytoene diphosphate to phytoene. Probably part of an operon y4aABCD involved in the synthesis of an isoprenoid compound [H]

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phytoene/squalene synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002060
- InterPro:   IPR017828
- InterPro:   IPR019845
- InterPro:   IPR008949 [H]

Pfam domain/function: PF00494 SQS_PSY [H]

EC number: =2.5.1.32 [H]

Molecular weight: Translated: 30925; Mature: 30794

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: PS01045 SQUALEN_PHYTOEN_SYN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVSNPVVDDNETDAAAVTSGSSFYLAMRILPAEQRDAMFQVYAFCRAVDDIADEGGARA
CCCCCCCCCCCCCCCCEEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
ERAAQLDRWRADIDDCYAGKPRASLVPLAREIGKFGLHRDDFHAMIDGMAMDAAEDICAP
HHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
DEATLDLYCDRVASSAGRLSVRIFGMPDEPGRVLSHHLGRALQLTNILRDIDDDAAINRC
CCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
YLPRELLAREGIAIADPQTIARDPLLPRVCATLVERALHHFAQADAVMDASPRAQVRAPR
CCCHHHHHHCCCEECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCH
IMSGAYRLILEAAVARGFAPPRAPLRKPRARMLLLAARYALF
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AVSNPVVDDNETDAAAVTSGSSFYLAMRILPAEQRDAMFQVYAFCRAVDDIADEGGARA
CCCCCCCCCCCCCCCEEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
ERAAQLDRWRADIDDCYAGKPRASLVPLAREIGKFGLHRDDFHAMIDGMAMDAAEDICAP
HHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
DEATLDLYCDRVASSAGRLSVRIFGMPDEPGRVLSHHLGRALQLTNILRDIDDDAAINRC
CCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
YLPRELLAREGIAIADPQTIARDPLLPRVCATLVERALHHFAQADAVMDASPRAQVRAPR
CCCHHHHHHCCCEECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCH
IMSGAYRLILEAAVARGFAPPRAPLRKPRARMLLLAARYALF
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]