Click here to switch to the map view.

The map label for this gene is clpV1 [H]

Identifier: 53723108

GI number: 53723108

Start: 2833428

End: 2836094

Strand: Reverse

Name: clpV1 [H]

Synonym: BPSS2094

Alternate gene names: 53723108

Gene position: 2836094-2833428 (Counterclockwise)

Preceding gene: 53723109

Following gene: 53723107

Centisome position: 89.38

GC content: 70.42

Gene sequence:

>2667_bases
ATGTCCGATATCGGCCGAGTGACCTTGTTTGGAAAACTGAACACTTTTCTCTACGAGACCCTGGAGCAGGCGACCGGCTT
TTGTCGGCTGCGCGGCAATCCCTATGTCGAGCTCGCGCACTGGCTGAACCAGATGCTCCGGCGCCCGGACAGCGACGTGC
ACCGGATCCTGCGCCGCTTCGACATCGACGCGGCGGCGATCGACCGCGGGATCGTTTCGGCGCTCGACCGGCTGCCGCGC
GGCGCGGGTTCCGTGTCCGATCTGTCCGCGCACATCGATGATGCGGTCGAACGCGCATGGGTGTACGCGACGCTCAAGTA
CGACGCGGCGCAGATTCGCGGCGCGGTGCTGCTGCTCGCGCTCGTGAAGACGCCGCAGCTGCGCAACGTGCTGTACGCGA
TCGCGCGGGACTTCGAGCGCATCGTGCCTGACGTGCTTGCCGACGAGCTCGAACGGATCGTCGCAGGCTCGCCGGAGGCG
CCGTCGCCCGCCGCGCGCGCGGCGGCGGGGGCGATCGGCGACGCGGGGGCGGCGCCGTCCGCCGCGCGCGAAGGCTCGGC
GCTCGCGCGCTACGCGATCGATCTGACCGCGCGTGCGCGCGCGGGCGAGATCGATCCGGTGGTCGGCCGCGACGGCGAGA
TTCGGCAGATCGTCGACATCCTGCTGCGCCGCCGGCAGAACAATCCGCTGCTCGTCGGCGAGGCGGGCGTCGGCAAGACC
GCGGTCGCCGAAGGCTTCGCGCTGCGCATCGTCGCGGGCGACGTGCCGCCGCCGCTGCGCGACGTCGAACTGTATCTGCT
CGACATCGGCCTGCTGCAGGCGGGCGCGAGCGTGAAGGGCGAATTCGAGAGCCGCCTGCGCGGCGTGATCGACGAGGCGA
GTTCGAGCGAGCGGCCCGTCATTCTGTTCATCGACGAGGTACACACGCTCGTCGGCGCGGGCGGCGCGGCGGGCACGGGC
GACGCGGCGAACCTGTTGAAGCCCGCGCTCGCGCGCGGCGTGCTGCGCACGATCGGCGCGACGACGTGGTCCGAATACAA
GCAATACATCGAGAAGGACCCGGCGCTCACGCGGCGCTTCCAGCTCGTGCAGGTGCGCGAGCCGGAGGAGGGCGCGGCGC
TGGCGATGCTGCGCGGGCTCGCCGCGAAGCTGGAGGCGCACCATCGCGTGCTCGTGCTCGACGATGCGCTGCAGGCGGCC
GTCACGCTGTCGCATCGCTACGTTCCCGCGCGGCAGTTGCCGGACAAGGCGATCAGCCTGCTCGACACCGCGTGCGCGCG
CGTCGCGGTCAGCCAGCACGCGGTGCCCGCGCCGATCGAGGACGTGCGGCGGCGGATCGATAGCCTGCGCGTCGAGCGCG
AGCTGATCGCGCGCGAGTGCGCGCTCGGCGCGGGCGATGCGCAACGGCTCGATGCAATCGATGCATCGATCGCCGGCGAA
CAGACCACGCTCGATGCGCTCGACGCGCGCTGGCAGGCGGAGCGCGACGCGCTCGGCAAGATCGTCGACTGGCGGGCCTC
GCTGCTGGCCGACGATTCTTCGCGCGTGCTCGATGAGGCGGCGCGCGCGGACGTGCAGGCGAAGCTCTCGGCCGCGCTGC
GCGCGCTCGCCGAATTGCAGGGCGAGACGCCGCTCGTGCTGCCCGCGGTCGATACGCACGCGGTGGCCGCCGTGGTGTCC
GACTGGACCGGCATCCCGCTCGGGCGGATGGTGCGCGACGAGATGCAATCGGTGCTGAAGCTCGCCGAGACGCTCGCCGA
GCGCGTGGTCGGCCAGCCGCACGCGGTCGAGCTGATCGCCGAGCGCATTCAGACCGCGCGCGCGCGGCTCGACGATCCGG
CCAAGCCGCACGGCGTGTTCCTGCTGTGCGGGCCGTCCGGCGTCGGCAAGACCGAGACGGCGCTCGCGCTCGCCGAGATG
CTGTACGGCGGCGAGCACAACGCGATCACGATCAACATGAGCGAGTTTCAGGAGGCGCACACCGTATCGACGCTCAAGGG
CGCGCCGCCCGGCTACGTCGGCTACGGACAGGGCGGGGTGCTGACCGAGGCGGTGCGGCGGCGGCCGTACAGTGTCGTGC
TGCTCGACGAAATCGAGAAGGCGCACCGCGACGTGCACGAGATCTTCTTTCAGGTGTTCGACAAGGGCTGGATGGAAGAC
GGCGAGGGGCGCTATATCGACTTTCGCAACACGGTGATCCTCCTCACGTCGAACGTCGGTTCCGAGCGCGTGATGCAGCT
GTGCCGCGATCCGCAGCGCCTGCCCGATGCGCAGACCTTGACCGATGCGCTGCGCGCGCCGCTGCGCGAGGTGTTTCCCG
CCGCGTTGTTGGGACGCCTGACGGTCGTTCCGTACTACCCGCTCACCGACGAGATGCTCGCGCGGATCGTCGCATTGCAG
CTCGCGCGCATCGAGCGGCGCATCGAAGCGCACCACGGCATCGCGTTGCGCTGCGCGGATTCGGCGACCGCGCTGATCGC
CGAGCGCTGCCGGACGATCGAATCCGGCGGCCGCATGGTCGACGCGATTCTCACGCACACGGTGCTGCCGCGCATCAGCC
AGGAGATCCTGCGCGCGACGATCGAGGGGCGCGCGCTGCGGGCGATCGACGTGAGCGCCGAAGACGGCCAGTTCGTTTAC
CGATTCGAAGAGGAGGGCGCGACGTGA

Upstream 100 bases:

>100_bases
ACGACGAGCGCATGCGCGCTTCGCGCGCACGATCGGGCGCGGCCGATCAGGCGGCCGCCGCCGGTGCGTTGATCGCCAAC
CTGCCTGAACGGGAACCGCC

Downstream 100 bases:

>100_bases
CCCGCGTGTTCACACTCGACAGCCTGCACGGCGACGACCTGAAGTTCCACCGGCTCTACGGCGAGGAAGCGCTCGGGCGG
ATGTTCGACTTCCGGATCGA

Product: Clp protease ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 888; Mature: 887

Protein sequence:

>888_residues
MSDIGRVTLFGKLNTFLYETLEQATGFCRLRGNPYVELAHWLNQMLRRPDSDVHRILRRFDIDAAAIDRGIVSALDRLPR
GAGSVSDLSAHIDDAVERAWVYATLKYDAAQIRGAVLLLALVKTPQLRNVLYAIARDFERIVPDVLADELERIVAGSPEA
PSPAARAAAGAIGDAGAAPSAAREGSALARYAIDLTARARAGEIDPVVGRDGEIRQIVDILLRRRQNNPLLVGEAGVGKT
AVAEGFALRIVAGDVPPPLRDVELYLLDIGLLQAGASVKGEFESRLRGVIDEASSSERPVILFIDEVHTLVGAGGAAGTG
DAANLLKPALARGVLRTIGATTWSEYKQYIEKDPALTRRFQLVQVREPEEGAALAMLRGLAAKLEAHHRVLVLDDALQAA
VTLSHRYVPARQLPDKAISLLDTACARVAVSQHAVPAPIEDVRRRIDSLRVERELIARECALGAGDAQRLDAIDASIAGE
QTTLDALDARWQAERDALGKIVDWRASLLADDSSRVLDEAARADVQAKLSAALRALAELQGETPLVLPAVDTHAVAAVVS
DWTGIPLGRMVRDEMQSVLKLAETLAERVVGQPHAVELIAERIQTARARLDDPAKPHGVFLLCGPSGVGKTETALALAEM
LYGGEHNAITINMSEFQEAHTVSTLKGAPPGYVGYGQGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEIFFQVFDKGWMED
GEGRYIDFRNTVILLTSNVGSERVMQLCRDPQRLPDAQTLTDALRAPLREVFPAALLGRLTVVPYYPLTDEMLARIVALQ
LARIERRIEAHHGIALRCADSATALIAERCRTIESGGRMVDAILTHTVLPRISQEILRATIEGRALRAIDVSAEDGQFVY
RFEEEGAT

Sequences:

>Translated_888_residues
MSDIGRVTLFGKLNTFLYETLEQATGFCRLRGNPYVELAHWLNQMLRRPDSDVHRILRRFDIDAAAIDRGIVSALDRLPR
GAGSVSDLSAHIDDAVERAWVYATLKYDAAQIRGAVLLLALVKTPQLRNVLYAIARDFERIVPDVLADELERIVAGSPEA
PSPAARAAAGAIGDAGAAPSAAREGSALARYAIDLTARARAGEIDPVVGRDGEIRQIVDILLRRRQNNPLLVGEAGVGKT
AVAEGFALRIVAGDVPPPLRDVELYLLDIGLLQAGASVKGEFESRLRGVIDEASSSERPVILFIDEVHTLVGAGGAAGTG
DAANLLKPALARGVLRTIGATTWSEYKQYIEKDPALTRRFQLVQVREPEEGAALAMLRGLAAKLEAHHRVLVLDDALQAA
VTLSHRYVPARQLPDKAISLLDTACARVAVSQHAVPAPIEDVRRRIDSLRVERELIARECALGAGDAQRLDAIDASIAGE
QTTLDALDARWQAERDALGKIVDWRASLLADDSSRVLDEAARADVQAKLSAALRALAELQGETPLVLPAVDTHAVAAVVS
DWTGIPLGRMVRDEMQSVLKLAETLAERVVGQPHAVELIAERIQTARARLDDPAKPHGVFLLCGPSGVGKTETALALAEM
LYGGEHNAITINMSEFQEAHTVSTLKGAPPGYVGYGQGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEIFFQVFDKGWMED
GEGRYIDFRNTVILLTSNVGSERVMQLCRDPQRLPDAQTLTDALRAPLREVFPAALLGRLTVVPYYPLTDEMLARIVALQ
LARIERRIEAHHGIALRCADSATALIAERCRTIESGGRMVDAILTHTVLPRISQEILRATIEGRALRAIDVSAEDGQFVY
RFEEEGAT
>Mature_887_residues
SDIGRVTLFGKLNTFLYETLEQATGFCRLRGNPYVELAHWLNQMLRRPDSDVHRILRRFDIDAAAIDRGIVSALDRLPRG
AGSVSDLSAHIDDAVERAWVYATLKYDAAQIRGAVLLLALVKTPQLRNVLYAIARDFERIVPDVLADELERIVAGSPEAP
SPAARAAAGAIGDAGAAPSAAREGSALARYAIDLTARARAGEIDPVVGRDGEIRQIVDILLRRRQNNPLLVGEAGVGKTA
VAEGFALRIVAGDVPPPLRDVELYLLDIGLLQAGASVKGEFESRLRGVIDEASSSERPVILFIDEVHTLVGAGGAAGTGD
AANLLKPALARGVLRTIGATTWSEYKQYIEKDPALTRRFQLVQVREPEEGAALAMLRGLAAKLEAHHRVLVLDDALQAAV
TLSHRYVPARQLPDKAISLLDTACARVAVSQHAVPAPIEDVRRRIDSLRVERELIARECALGAGDAQRLDAIDASIAGEQ
TTLDALDARWQAERDALGKIVDWRASLLADDSSRVLDEAARADVQAKLSAALRALAELQGETPLVLPAVDTHAVAAVVSD
WTGIPLGRMVRDEMQSVLKLAETLAERVVGQPHAVELIAERIQTARARLDDPAKPHGVFLLCGPSGVGKTETALALAEML
YGGEHNAITINMSEFQEAHTVSTLKGAPPGYVGYGQGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEIFFQVFDKGWMEDG
EGRYIDFRNTVILLTSNVGSERVMQLCRDPQRLPDAQTLTDALRAPLREVFPAALLGRLTVVPYYPLTDEMLARIVALQL
ARIERRIEAHHGIALRCADSATALIAERCRTIESGGRMVDAILTHTVLPRISQEILRATIEGRALRAIDVSAEDGQFVYR
FEEEGAT

Specific function: Required for secretion of hcp1 probably by providing the energy source for its translocation [H]

COG id: COG0542

COG function: function code O; ATPases with chaperone activity, ATP-binding subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the clpA/clpB family [H]

Homologues:

Organism=Homo sapiens, GI13540606, Length=262, Percent_Identity=33.206106870229, Blast_Score=139, Evalue=9e-33,
Organism=Escherichia coli, GI1788943, Length=848, Percent_Identity=39.0330188679245, Blast_Score=549, Evalue=1e-157,
Organism=Escherichia coli, GI1787109, Length=441, Percent_Identity=35.3741496598639, Blast_Score=236, Evalue=5e-63,
Organism=Saccharomyces cerevisiae, GI6320464, Length=709, Percent_Identity=38.5049365303244, Blast_Score=463, Evalue=1e-131,
Organism=Saccharomyces cerevisiae, GI6323002, Length=696, Percent_Identity=35.632183908046, Blast_Score=431, Evalue=1e-121,

Paralogues:

None

Copy number: 560 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR003959
- InterPro:   IPR017729
- InterPro:   IPR018368
- InterPro:   IPR001270
- InterPro:   IPR019489
- InterPro:   IPR023150 [H]

Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF10431 ClpB_D2-small [H]

EC number: NA

Molecular weight: Translated: 96415; Mature: 96284

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: PS00870 CLPAB_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDIGRVTLFGKLNTFLYETLEQATGFCRLRGNPYVELAHWLNQMLRRPDSDVHRILRRF
CCCCCCEEEEHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
DIDAAAIDRGIVSALDRLPRGAGSVSDLSAHIDDAVERAWVYATLKYDAAQIRGAVLLLA
CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHHH
LVKTPQLRNVLYAIARDFERIVPDVLADELERIVAGSPEAPSPAARAAAGAIGDAGAAPS
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCC
AAREGSALARYAIDLTARARAGEIDPVVGRDGEIRQIVDILLRRRQNNPLLVGEAGVGKT
CHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCH
AVAEGFALRIVAGDVPPPLRDVELYLLDIGLLQAGASVKGEFESRLRGVIDEASSSERPV
HHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCE
ILFIDEVHTLVGAGGAAGTGDAANLLKPALARGVLRTIGATTWSEYKQYIEKDPALTRRF
EEEHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHE
QLVQVREPEEGAALAMLRGLAAKLEAHHRVLVLDDALQAAVTLSHRYVPARQLPDKAISL
EEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHCCCCHHHCCHHHHHH
LDTACARVAVSQHAVPAPIEDVRRRIDSLRVERELIARECALGAGDAQRLDAIDASIAGE
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
QTTLDALDARWQAERDALGKIVDWRASLLADDSSRVLDEAARADVQAKLSAALRALAELQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GETPLVLPAVDTHAVAAVVSDWTGIPLGRMVRDEMQSVLKLAETLAERVVGQPHAVELIA
CCCCEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
ERIQTARARLDDPAKPHGVFLLCGPSGVGKTETALALAEMLYGGEHNAITINMSEFQEAH
HHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH
TVSTLKGAPPGYVGYGQGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEIFFQVFDKGWMED
HHHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCC
GEGRYIDFRNTVILLTSNVGSERVMQLCRDPQRLPDAQTLTDALRAPLREVFPAALLGRL
CCCCEEEECCEEEEEECCCCHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
TVVPYYPLTDEMLARIVALQLARIERRIEAHHGIALRCADSATALIAERCRTIESGGRMV
HEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHCCCHHH
DAILTHTVLPRISQEILRATIEGRALRAIDVSAEDGQFVYRFEEEGAT
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCC
>Mature Secondary Structure 
SDIGRVTLFGKLNTFLYETLEQATGFCRLRGNPYVELAHWLNQMLRRPDSDVHRILRRF
CCCCCEEEEHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
DIDAAAIDRGIVSALDRLPRGAGSVSDLSAHIDDAVERAWVYATLKYDAAQIRGAVLLLA
CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHHH
LVKTPQLRNVLYAIARDFERIVPDVLADELERIVAGSPEAPSPAARAAAGAIGDAGAAPS
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCC
AAREGSALARYAIDLTARARAGEIDPVVGRDGEIRQIVDILLRRRQNNPLLVGEAGVGKT
CHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCH
AVAEGFALRIVAGDVPPPLRDVELYLLDIGLLQAGASVKGEFESRLRGVIDEASSSERPV
HHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCE
ILFIDEVHTLVGAGGAAGTGDAANLLKPALARGVLRTIGATTWSEYKQYIEKDPALTRRF
EEEHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHE
QLVQVREPEEGAALAMLRGLAAKLEAHHRVLVLDDALQAAVTLSHRYVPARQLPDKAISL
EEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHCCCCHHHCCHHHHHH
LDTACARVAVSQHAVPAPIEDVRRRIDSLRVERELIARECALGAGDAQRLDAIDASIAGE
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
QTTLDALDARWQAERDALGKIVDWRASLLADDSSRVLDEAARADVQAKLSAALRALAELQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GETPLVLPAVDTHAVAAVVSDWTGIPLGRMVRDEMQSVLKLAETLAERVVGQPHAVELIA
CCCCEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
ERIQTARARLDDPAKPHGVFLLCGPSGVGKTETALALAEMLYGGEHNAITINMSEFQEAH
HHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH
TVSTLKGAPPGYVGYGQGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEIFFQVFDKGWMED
HHHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCC
GEGRYIDFRNTVILLTSNVGSERVMQLCRDPQRLPDAQTLTDALRAPLREVFPAALLGRL
CCCCEEEECCEEEEEECCCCHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
TVVPYYPLTDEMLARIVALQLARIERRIEAHHGIALRCADSATALIAERCRTIESGGRMV
HEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHCCCHHH
DAILTHTVLPRISQEILRATIEGRALRAIDVSAEDGQFVYRFEEEGAT
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]