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The map label for this gene is ydaM [H]

Identifier: 53723033

GI number: 53723033

Start: 2722747

End: 2724309

Strand: Reverse

Name: ydaM [H]

Synonym: BPSS2015

Alternate gene names: 53723033

Gene position: 2724309-2722747 (Counterclockwise)

Preceding gene: 53723035

Following gene: 53723032

Centisome position: 85.86

GC content: 70.12

Gene sequence:

>1563_bases
ATGAAGAGCGGGCGGGCGATGTCGTTGTGCGTGCAATGCGTACTGTTGCTGATCGTGTTCGCGTGTTCGCTGAGCGCGCG
CGGCACGGCGCTGGGGCCGGCGTCAGCGTCGCTCGCGACGGCGCCGTTCGCGCGCACCGCGCAGGCTCGCGCGTTCGCGC
AACCGAGCCTGCCGCACGCGGAAGCGGTGGCGTTCGCGTTCGCGCAAGCCGAGCCGTTCGACGCCGAGCGGCCTGCCGCG
GCCGGGCGCCCGGCCGCGGCCGATGCGCCGCCGGCGCCCGGCAAGGGGATCGTCATCAGCTTGTGCGCGGCCTACCTGTG
GGTATTCGCGCTGCTGACCCTCGTCTACGCGTCGCGCCATTACGTCTTCGGTCTCGACCGTCTGTTCAAGCCGCAGCGCG
CGCCATACCGCGCGATCACGCACGCGGACTGGCCGGAGATCACGGTGTTCGTCGCCGCGCACAACGAGGAGGCGGTCGTC
GCCGATTGCCTGACGGCGCTGCTCGCGACGACCTATCCGCGCGAGCGTCTGACGATCGTCCCGGTCAACGATCGCTCGAC
CGACAACACGCGCGCGCTGATCGACGAAGTGCAGGCGCGCGCGCCCGAGCTCATCAAGCCGTTTCATCGCGAGAGCGGCA
AGCCGGGCAAGGCCGCGGCGCTGAAGGACGCGCTGCGCGAGATACGCGGCGACATCATGGTCGTGTTCGACGCCGACTAT
CTGCCGCGCCCGGGCCTGCTCAAGGAGCTGGTCGCGCCGTTCTTCGATCCGGAGGTGGGCGCGGTGATGGGCCGTGTCGT
GCCGCAGAACGCCGATCGCAATTTGCTCGCGCGTCTGCTCGATCTCGAGCGCGCGGGCGGCTACCAGGTGAACCAGCAGG
CGCGCAATAACCTCGGCCTCGTGCCGCAGTACGGCGGCACGGTCGGCGGGGTCCGCAAGAGCGCGCTCGACGCGGTCGGC
GGCTGGCGCGACGACACGCTCGCCGAAGACACCGACATGACCTACCGGTTGCTGCTGAGCAACTGGCGCACCGTCTATCT
GAACCATGCGGAGTGCTACGAGGAAGTGCCGGAGCGGTGGCCCGTGCGCGCGCGCCAGCTCACGCGCTGGGCGAAGGGGC
ACAACCAGACGTTGTTTCGCTACCTGATTCCGCTGCTGCGCAGCCCGGTGACGCCGCGCCGCTGCCGGCTCGACGGCGCG
CTGCTGCTCGGCGTGTTCGTGATGCCCGCGCTGCTCGCGCTCGCGTGGGGCATCGCGCTCGCGCTGTATCTGACGAACGG
CATCGATTCGCTCGTGCTCGGGCTGCTCGTGTCCGTGTTCGCGCTGTTCGCGTTCAGCACGTTCGGCAACTTCGGCGTGT
TCTTCGAGATCGTCGTCGCGGCGCGCCTCGACGGCCGGGCGACGCGGCTGCGGCTCGTGCCGATGAACGTCGTCGGATTC
TGCGTGACGATCGCGGCCGTCGTCGCCGCGCTGTGGGGGCTCGCGCTCGACGCGCTGCTGCGTCGCGAGCTGCGTTGGGA
CAAGACCGAGCGCTTCCGCCGGCCGCTGAATTCGGGACGATGA

Upstream 100 bases:

>100_bases
GCGCGACGGGCGATATGCGCGACACGCGGCGCCGGTTTCATTTTGCAAGTCCGTACGGGGCGAGCGCAGCCGCCGCCGAT
GCGGACACGGGGACACGAGC

Downstream 100 bases:

>100_bases
GCGATGACGACCTTCAACGTGATGATGCCGGTGGCGGGAGTGCTCGCGCTGCCGTTCCTGCCGCTGCTGAACGAACTCGT
CAGGCGCAGCGACGTCGACG

Product: inner membrane glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 520; Mature: 520

Protein sequence:

>520_residues
MKSGRAMSLCVQCVLLLIVFACSLSARGTALGPASASLATAPFARTAQARAFAQPSLPHAEAVAFAFAQAEPFDAERPAA
AGRPAAADAPPAPGKGIVISLCAAYLWVFALLTLVYASRHYVFGLDRLFKPQRAPYRAITHADWPEITVFVAAHNEEAVV
ADCLTALLATTYPRERLTIVPVNDRSTDNTRALIDEVQARAPELIKPFHRESGKPGKAAALKDALREIRGDIMVVFDADY
LPRPGLLKELVAPFFDPEVGAVMGRVVPQNADRNLLARLLDLERAGGYQVNQQARNNLGLVPQYGGTVGGVRKSALDAVG
GWRDDTLAEDTDMTYRLLLSNWRTVYLNHAECYEEVPERWPVRARQLTRWAKGHNQTLFRYLIPLLRSPVTPRRCRLDGA
LLLGVFVMPALLALAWGIALALYLTNGIDSLVLGLLVSVFALFAFSTFGNFGVFFEIVVAARLDGRATRLRLVPMNVVGF
CVTIAAVVAALWGLALDALLRRELRWDKTERFRRPLNSGR

Sequences:

>Translated_520_residues
MKSGRAMSLCVQCVLLLIVFACSLSARGTALGPASASLATAPFARTAQARAFAQPSLPHAEAVAFAFAQAEPFDAERPAA
AGRPAAADAPPAPGKGIVISLCAAYLWVFALLTLVYASRHYVFGLDRLFKPQRAPYRAITHADWPEITVFVAAHNEEAVV
ADCLTALLATTYPRERLTIVPVNDRSTDNTRALIDEVQARAPELIKPFHRESGKPGKAAALKDALREIRGDIMVVFDADY
LPRPGLLKELVAPFFDPEVGAVMGRVVPQNADRNLLARLLDLERAGGYQVNQQARNNLGLVPQYGGTVGGVRKSALDAVG
GWRDDTLAEDTDMTYRLLLSNWRTVYLNHAECYEEVPERWPVRARQLTRWAKGHNQTLFRYLIPLLRSPVTPRRCRLDGA
LLLGVFVMPALLALAWGIALALYLTNGIDSLVLGLLVSVFALFAFSTFGNFGVFFEIVVAARLDGRATRLRLVPMNVVGF
CVTIAAVVAALWGLALDALLRRELRWDKTERFRRPLNSGR
>Mature_520_residues
MKSGRAMSLCVQCVLLLIVFACSLSARGTALGPASASLATAPFARTAQARAFAQPSLPHAEAVAFAFAQAEPFDAERPAA
AGRPAAADAPPAPGKGIVISLCAAYLWVFALLTLVYASRHYVFGLDRLFKPQRAPYRAITHADWPEITVFVAAHNEEAVV
ADCLTALLATTYPRERLTIVPVNDRSTDNTRALIDEVQARAPELIKPFHRESGKPGKAAALKDALREIRGDIMVVFDADY
LPRPGLLKELVAPFFDPEVGAVMGRVVPQNADRNLLARLLDLERAGGYQVNQQARNNLGLVPQYGGTVGGVRKSALDAVG
GWRDDTLAEDTDMTYRLLLSNWRTVYLNHAECYEEVPERWPVRARQLTRWAKGHNQTLFRYLIPLLRSPVTPRRCRLDGA
LLLGVFVMPALLALAWGIALALYLTNGIDSLVLGLLVSVFALFAFSTFGNFGVFFEIVVAARLDGRATRLRLVPMNVVGF
CVTIAAVVAALWGLALDALLRRELRWDKTERFRRPLNSGR

Specific function: Unknown

COG id: COG1215

COG function: function code M; Glycosyltransferases, probably involved in cell wall biogenesis

Gene ontology:

Cell location: Membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787259, Length=342, Percent_Identity=29.2397660818713, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI87082284, Length=305, Percent_Identity=24.5901639344262, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 56967; Mature: 56967

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSGRAMSLCVQCVLLLIVFACSLSARGTALGPASASLATAPFARTAQARAFAQPSLPHA
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCCCHH
EAVAFAFAQAEPFDAERPAAAGRPAAADAPPAPGKGIVISLCAAYLWVFALLTLVYASRH
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCH
YVFGLDRLFKPQRAPYRAITHADWPEITVFVAAHNEEAVVADCLTALLATTYPRERLTIV
HHEEHHHHCCCCCCCCHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEE
PVNDRSTDNTRALIDEVQARAPELIKPFHRESGKPGKAAALKDALREIRGDIMVVFDADY
ECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEECCC
LPRPGLLKELVAPFFDPEVGAVMGRVVPQNADRNLLARLLDLERAGGYQVNQQARNNLGL
CCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEECHHHHCCCCC
VPQYGGTVGGVRKSALDAVGGWRDDTLAEDTDMTYRLLLSNWRTVYLNHAECYEEVPERW
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCEEEECHHHHHHHHHHHC
PVRARQLTRWAKGHNQTLFRYLIPLLRSPVTPRRCRLDGALLLGVFVMPALLALAWGIAL
CHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALYLTNGIDSLVLGLLVSVFALFAFSTFGNFGVFFEIVVAARLDGRATRLRLVPMNVVGF
HHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEEHHHHHHH
CVTIAAVVAALWGLALDALLRRELRWDKTERFRRPLNSGR
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCC
>Mature Secondary Structure
MKSGRAMSLCVQCVLLLIVFACSLSARGTALGPASASLATAPFARTAQARAFAQPSLPHA
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCCCHH
EAVAFAFAQAEPFDAERPAAAGRPAAADAPPAPGKGIVISLCAAYLWVFALLTLVYASRH
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCH
YVFGLDRLFKPQRAPYRAITHADWPEITVFVAAHNEEAVVADCLTALLATTYPRERLTIV
HHEEHHHHCCCCCCCCHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEE
PVNDRSTDNTRALIDEVQARAPELIKPFHRESGKPGKAAALKDALREIRGDIMVVFDADY
ECCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEECCC
LPRPGLLKELVAPFFDPEVGAVMGRVVPQNADRNLLARLLDLERAGGYQVNQQARNNLGL
CCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEECHHHHCCCCC
VPQYGGTVGGVRKSALDAVGGWRDDTLAEDTDMTYRLLLSNWRTVYLNHAECYEEVPERW
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCEEEECHHHHHHHHHHHC
PVRARQLTRWAKGHNQTLFRYLIPLLRSPVTPRRCRLDGALLLGVFVMPALLALAWGIAL
CHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALYLTNGIDSLVLGLLVSVFALFAFSTFGNFGVFFEIVVAARLDGRATRLRLVPMNVVGF
HHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEEHHHHHHH
CVTIAAVVAALWGLALDALLRRELRWDKTERFRRPLNSGR
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]