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The map label for this gene is ndoA [H]

Identifier: 53722907

GI number: 53722907

Start: 2562408

End: 2562737

Strand: Reverse

Name: ndoA [H]

Synonym: BPSS1886

Alternate gene names: 53722907

Gene position: 2562737-2562408 (Counterclockwise)

Preceding gene: 53722908

Following gene: 53722906

Centisome position: 80.77

GC content: 67.27

Gene sequence:

>330_bases
ATGAGCAACGAAACCGCTGCCGCGTGGCACACGCTCGGCGCACTCGACGAATTCTCCGAGGACGAGCCGGCCGCGCGCGT
CGTCGGCAACAAGCCGATCGCGGTGTTCCGGGTGGGCGACGACGTGTTCGCGCTGCATGACCTGTGCACGCACGGACATG
CGCGGCTGTCGGAGGGATTCGTCGAGAACGGCTGCGTCGAGTGTCCGCTGCATCAGGGGCTCTTCGATCTGCGCACCGGC
GCGCCGAAATGCGCGCCGGTGACGCAGCCCGTACGCGCGTATCCGATTCGCATCGTCGACGGGCAGGTCGAGATCCATGT
CGACGGCTGA

Upstream 100 bases:

>100_bases
CGAGGGGCTGCGCTACCGGAAGAAGCGCGTGATTTACGACACGTCGCGCGTGCAGACGCTGCTCGCGACGCCGATCTGAT
TCTTGCAAGGAGTTCGAAGC

Downstream 100 bases:

>100_bases
CCCGTATCTGATCGCGGGCGGCGGGCACGCGGCGCGCCGCGCGGCCGAGACGCTTCGCGAGCGCGACGCGGCCGCGCGCA
TCGTGATGATCGGCGCGGAG

Product: aromatic hydrocarbons catabolism-related dioxygenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 108

Protein sequence:

>109_residues
MSNETAAAWHTLGALDEFSEDEPAARVVGNKPIAVFRVGDDVFALHDLCTHGHARLSEGFVENGCVECPLHQGLFDLRTG
APKCAPVTQPVRAYPIRIVDGQVEIHVDG

Sequences:

>Translated_109_residues
MSNETAAAWHTLGALDEFSEDEPAARVVGNKPIAVFRVGDDVFALHDLCTHGHARLSEGFVENGCVECPLHQGLFDLRTG
APKCAPVTQPVRAYPIRIVDGQVEIHVDG
>Mature_108_residues
SNETAAAWHTLGALDEFSEDEPAARVVGNKPIAVFRVGDDVFALHDLCTHGHARLSEGFVENGCVECPLHQGLFDLRTGA
PKCAPVTQPVRAYPIRIVDGQVEIHVDG

Specific function: Component of naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyzes the incorporation of both atoms of molecular oxygen into naphthalene to form cis- naphthalene dihydrodiol. This subunit is a 2Fe-2S ferredoxin that transfers electrons

COG id: COG2146

COG function: function code PR; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

Organism=Escherichia coli, GI1788890, Length=85, Percent_Identity=41.1764705882353, Blast_Score=75, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017941 [H]

Pfam domain/function: PF00355 Rieske [H]

EC number: NA

Molecular weight: Translated: 11761; Mature: 11630

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNETAAAWHTLGALDEFSEDEPAARVVGNKPIAVFRVGDDVFALHDLCTHGHARLSEGF
CCCCCCHHHHHHHCHHHCCCCCCCEEECCCCCEEEEEECCCHHHHHHHHHCCCHHHHCCH
VENGCVECPLHQGLFDLRTGAPKCAPVTQPVRAYPIRIVDGQVEIHVDG
HCCCCEECCCCCCCEECCCCCCCCCCCCCCCCEEEEEEECCEEEEEECC
>Mature Secondary Structure 
SNETAAAWHTLGALDEFSEDEPAARVVGNKPIAVFRVGDDVFALHDLCTHGHARLSEGF
CCCCCHHHHHHHCHHHCCCCCCCEEECCCCCEEEEEECCCHHHHHHHHHCCCHHHHCCH
VENGCVECPLHQGLFDLRTGAPKCAPVTQPVRAYPIRIVDGQVEIHVDG
HCCCCEECCCCCCCEECCCCCCCCCCCCCCCCEEEEEEECCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA