Click here to switch to the map view.

The map label for this gene is yngJ [H]

Identifier: 53722876

GI number: 53722876

Start: 2521809

End: 2523041

Strand: Reverse

Name: yngJ [H]

Synonym: BPSS1857

Alternate gene names: 53722876

Gene position: 2523041-2521809 (Counterclockwise)

Preceding gene: 53722879

Following gene: 53722875

Centisome position: 79.52

GC content: 71.78

Gene sequence:

>1233_bases
ATGGATTTCTCCCCCTCGGCCCGCTGCCGCGAATTGAGCGAGCGCATCGCGGCCTTCATGCGCGACGAGATCGCGCCCGT
CGAGGCGCGCTACGCCGAGCAACTGACGGGCGACGTCGACTGGCGGCGCTGGCGGCAGCCCGACGTGATGGAAACGCTGA
AGGCGAAGGCGCGCGCGGCCGGCCTCTGGAACCTGTTCCTGCCCGAGGCCGAGCACGGCGGCGCGGGGCTGTCGAACGCC
GAGTACGCCCCGCTCGCCGAGCTGATGGGGCATTCGTTCATCGCGCCGGAGGCGTTCAACTGCAACGCGCCCGACACCGG
CAACATGGAGGTGCTCGCGCGCTACGGCTCGCCCGAGCAGCGCCGCCGCTGGCTCGAGCCGCTGCTCGCGGGCGAGATCC
GTTCGGCGTTCTGCATGACGGAGCCGGAGGTCGCTTCGTCGGACGCGACGAACATGCGCGCGACGGCCAAGCTCGAAGGC
GACGAAATCGTGCTGAACGGCCGCAAGTGGTGGTCGACCGGCATCGGTCATCCGCTCGCGCGCGTCGTGATCTTCATGGG
GCTCACCGATCCGCAGGCGGAACCGCATCGCCGGCACACGATGGTGCTGTGCCCGCTCGACGCGCCCGGCGTGCGGATCG
AGCGGATGCTGCCGGTGTTCAACGCGTACGACGAGCCGTCGGGCCACGGCGAGGTCAGCTTCACGAACGTGCGGCTGCCG
GCGTCGAACGTGATCCTCGGGCCGGGGCGCGGCTTCGAGATCGCGCAGGGCCGGCTCGGCCCGGGCCGCATTCACCACTG
CATGCGCGCGCTCGGCGCGGCGGAGAAGGCGCTCACGCTGCTGTGCGCGCGCGCGACGGCGCGCACCGCGTTCGGCAAGC
CGCTCGTCAAGCTCGGCGGCAACGGCGACGTCGTCGCGAACCTGCGCATGGCGATCGAGCAGGCGCGCCTGCTGACGCTG
AAGGCCGCCTGGACGATCGACACGCAGGGCGTGAAGGCGGCGCTGTCGCTGATCTCGCAGATCAAGGTCGTCGTGCCCGC
GGTCGCGCAGCAGGCGGCCGACGCGGCGATCCAGATCCACGGCGGCGCGGGCCTGTCCAACGATTTCCCGCTCGCCGCGC
TCTACGCGTACGCGCGCGTGCTGCGCATCGCGGACGGGCCGGACGAGGTGCATCGCGCGGTCGTCGCGAAGCTCGAGGTG
AAGCGGCAGCTCGCCGCGGCGGAGGCCGCATGA

Upstream 100 bases:

>100_bases
CATCAATGGCATCTATGCCATCGCATAATAAATATTCATTTCATCGATTGTCGAGGATCGCGTACGCTCGTTTGCATTCG
AACCGACTATCGGAGACGCC

Downstream 100 bases:

>100_bases
GCGTGCGCCTCGACGATGCGCGCGACGTGCGCGACGAAGACCGGCTCGACGCGGCGAAGCTCGACGCGTACCTGAAGCCG
CGCATTGCGGGGTTGAGCGG

Product: acyl-CoA dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 410

Protein sequence:

>410_residues
MDFSPSARCRELSERIAAFMRDEIAPVEARYAEQLTGDVDWRRWRQPDVMETLKAKARAAGLWNLFLPEAEHGGAGLSNA
EYAPLAELMGHSFIAPEAFNCNAPDTGNMEVLARYGSPEQRRRWLEPLLAGEIRSAFCMTEPEVASSDATNMRATAKLEG
DEIVLNGRKWWSTGIGHPLARVVIFMGLTDPQAEPHRRHTMVLCPLDAPGVRIERMLPVFNAYDEPSGHGEVSFTNVRLP
ASNVILGPGRGFEIAQGRLGPGRIHHCMRALGAAEKALTLLCARATARTAFGKPLVKLGGNGDVVANLRMAIEQARLLTL
KAAWTIDTQGVKAALSLISQIKVVVPAVAQQAADAAIQIHGGAGLSNDFPLAALYAYARVLRIADGPDEVHRAVVAKLEV
KRQLAAAEAA

Sequences:

>Translated_410_residues
MDFSPSARCRELSERIAAFMRDEIAPVEARYAEQLTGDVDWRRWRQPDVMETLKAKARAAGLWNLFLPEAEHGGAGLSNA
EYAPLAELMGHSFIAPEAFNCNAPDTGNMEVLARYGSPEQRRRWLEPLLAGEIRSAFCMTEPEVASSDATNMRATAKLEG
DEIVLNGRKWWSTGIGHPLARVVIFMGLTDPQAEPHRRHTMVLCPLDAPGVRIERMLPVFNAYDEPSGHGEVSFTNVRLP
ASNVILGPGRGFEIAQGRLGPGRIHHCMRALGAAEKALTLLCARATARTAFGKPLVKLGGNGDVVANLRMAIEQARLLTL
KAAWTIDTQGVKAALSLISQIKVVVPAVAQQAADAAIQIHGGAGLSNDFPLAALYAYARVLRIADGPDEVHRAVVAKLEV
KRQLAAAEAA
>Mature_410_residues
MDFSPSARCRELSERIAAFMRDEIAPVEARYAEQLTGDVDWRRWRQPDVMETLKAKARAAGLWNLFLPEAEHGGAGLSNA
EYAPLAELMGHSFIAPEAFNCNAPDTGNMEVLARYGSPEQRRRWLEPLLAGEIRSAFCMTEPEVASSDATNMRATAKLEG
DEIVLNGRKWWSTGIGHPLARVVIFMGLTDPQAEPHRRHTMVLCPLDAPGVRIERMLPVFNAYDEPSGHGEVSFTNVRLP
ASNVILGPGRGFEIAQGRLGPGRIHHCMRALGAAEKALTLLCARATARTAFGKPLVKLGGNGDVVANLRMAIEQARLLTL
KAAWTIDTQGVKAALSLISQIKVVVPAVAQQAADAAIQIHGGAGLSNDFPLAALYAYARVLRIADGPDEVHRAVVAKLEV
KRQLAAAEAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI48976061, Length=405, Percent_Identity=54.5679012345679, Blast_Score=426, Evalue=1e-119,
Organism=Homo sapiens, GI211971008, Length=405, Percent_Identity=54.5679012345679, Blast_Score=425, Evalue=1e-119,
Organism=Homo sapiens, GI38505218, Length=406, Percent_Identity=50, Blast_Score=405, Evalue=1e-113,
Organism=Homo sapiens, GI4557231, Length=409, Percent_Identity=27.8728606356968, Blast_Score=148, Evalue=7e-36,
Organism=Homo sapiens, GI187960098, Length=409, Percent_Identity=27.8728606356968, Blast_Score=148, Evalue=8e-36,
Organism=Homo sapiens, GI4557233, Length=336, Percent_Identity=31.8452380952381, Blast_Score=134, Evalue=1e-31,
Organism=Homo sapiens, GI21361497, Length=385, Percent_Identity=29.0909090909091, Blast_Score=125, Evalue=1e-28,
Organism=Homo sapiens, GI4501859, Length=386, Percent_Identity=26.9430051813472, Blast_Score=116, Evalue=4e-26,
Organism=Homo sapiens, GI7656849, Length=391, Percent_Identity=26.0869565217391, Blast_Score=107, Evalue=3e-23,
Organism=Homo sapiens, GI4557235, Length=395, Percent_Identity=26.5822784810127, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI76496475, Length=395, Percent_Identity=26.5822784810127, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI226958412, Length=393, Percent_Identity=24.9363867684478, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI226958414, Length=328, Percent_Identity=26.5243902439024, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI4501857, Length=398, Percent_Identity=25.6281407035176, Blast_Score=87, Evalue=4e-17,
Organism=Escherichia coli, GI87081958, Length=314, Percent_Identity=27.3885350318471, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1786223, Length=343, Percent_Identity=21.865889212828, Blast_Score=68, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17562446, Length=368, Percent_Identity=50.8152173913043, Blast_Score=368, Evalue=1e-102,
Organism=Caenorhabditis elegans, GI17534899, Length=399, Percent_Identity=29.0726817042606, Blast_Score=155, Evalue=3e-38,
Organism=Caenorhabditis elegans, GI17569725, Length=404, Percent_Identity=27.970297029703, Blast_Score=146, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI17570075, Length=408, Percent_Identity=27.4509803921569, Blast_Score=139, Evalue=3e-33,
Organism=Caenorhabditis elegans, GI17538396, Length=386, Percent_Identity=27.720207253886, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17505929, Length=354, Percent_Identity=27.683615819209, Blast_Score=104, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI17551932, Length=334, Percent_Identity=26.6467065868263, Blast_Score=104, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17506239, Length=342, Percent_Identity=26.6081871345029, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17508101, Length=345, Percent_Identity=26.9565217391304, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17533517, Length=363, Percent_Identity=26.9972451790634, Blast_Score=102, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI32563615, Length=190, Percent_Identity=26.3157894736842, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24660351, Length=394, Percent_Identity=28.9340101522843, Blast_Score=138, Evalue=6e-33,
Organism=Drosophila melanogaster, GI21356377, Length=339, Percent_Identity=30.0884955752212, Blast_Score=122, Evalue=6e-28,
Organism=Drosophila melanogaster, GI24646207, Length=341, Percent_Identity=30.791788856305, Blast_Score=120, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24666513, Length=391, Percent_Identity=26.5984654731458, Blast_Score=116, Evalue=3e-26,
Organism=Drosophila melanogaster, GI281363737, Length=349, Percent_Identity=26.3610315186246, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI21355753, Length=390, Percent_Identity=23.3333333333333, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 44400; Mature: 44400

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFSPSARCRELSERIAAFMRDEIAPVEARYAEQLTGDVDWRRWRQPDVMETLKAKARAA
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHC
GLWNLFLPEAEHGGAGLSNAEYAPLAELMGHSFIAPEAFNCNAPDTGNMEVLARYGSPEQ
CCCEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCHHH
RRRWLEPLLAGEIRSAFCMTEPEVASSDATNMRATAKLEGDEIVLNGRKWWSTGIGHPLA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCEEEECCCHHHCCCCCHHHH
RVVIFMGLTDPQAEPHRRHTMVLCPLDAPGVRIERMLPVFNAYDEPSGHGEVSFTNVRLP
HHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECC
ASNVILGPGRGFEIAQGRLGPGRIHHCMRALGAAEKALTLLCARATARTAFGKPLVKLGG
CCCEEECCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
NGDVVANLRMAIEQARLLTLKAAWTIDTQGVKAALSLISQIKVVVPAVAQQAADAAIQIH
CCCEEHHHHHHHHHHHHEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
GGAGLSNDFPLAALYAYARVLRIADGPDEVHRAVVAKLEVKRQLAAAEAA
CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDFSPSARCRELSERIAAFMRDEIAPVEARYAEQLTGDVDWRRWRQPDVMETLKAKARAA
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHC
GLWNLFLPEAEHGGAGLSNAEYAPLAELMGHSFIAPEAFNCNAPDTGNMEVLARYGSPEQ
CCCEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCHHH
RRRWLEPLLAGEIRSAFCMTEPEVASSDATNMRATAKLEGDEIVLNGRKWWSTGIGHPLA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCEEEECCCHHHCCCCCHHHH
RVVIFMGLTDPQAEPHRRHTMVLCPLDAPGVRIERMLPVFNAYDEPSGHGEVSFTNVRLP
HHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECC
ASNVILGPGRGFEIAQGRLGPGRIHHCMRALGAAEKALTLLCARATARTAFGKPLVKLGG
CCCEEECCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
NGDVVANLRMAIEQARLLTLKAAWTIDTQGVKAALSLISQIKVVVPAVAQQAADAAIQIH
CCCEEHHHHHHHHHHHHEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
GGAGLSNDFPLAALYAYARVLRIADGPDEVHRAVVAKLEVKRQLAAAEAA
CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]