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The map label for this gene is 53722860

Identifier: 53722860

GI number: 53722860

Start: 2503507

End: 2504775

Strand: Reverse

Name: 53722860

Synonym: BPSS1841

Alternate gene names: NA

Gene position: 2504775-2503507 (Counterclockwise)

Preceding gene: 53722861

Following gene: 53722859

Centisome position: 78.94

GC content: 72.81

Gene sequence:

>1269_bases
ATGATGGATGCCGCCGTTCACCGTGCGATCGATGCCGTCTGGCGGATCGAGGCCGCGAGAATCATCGCGCACGTCGCGCG
GCTCGTGCGCGACGTCGGCGTGGCCGAAGAGCTCGCGCAGGACGCGCTCGTCGCGGCGCTCGAGCACTGGCCGAGCGGCG
GCGTGCCGGACAATCCGGGCGCATGGCTGATGACGGCCGCGAAGCGCCGCGCGCTCGATCATCTGCGGCAGCACGCGCTG
CACGCGCGCAAGCGCGAGCAGATCGGCCTCGATCTCGATGCGCTCGGCGCGCACGTCGCGCCTGACGTCGCCGACGTGTT
CGAAGCGGCGCGCGACGACGACATCGGCGACGATCTGCTGCGGCTCGTGTTCACCGCTTGTCATCCGGTGCTGTCGACCG
ACGCGCGCGTCGCGCTGACGCTGCGGCTGCTCGGGGGGCTGACGACGGGCGAGATCGCGCGCGCGTTTCTCACGCCGGAG
CCGACGATCGCGCAGCGGATCGTGCGCGCGAAGCGCACGCTATCGGCGGCGAAGGTGCCGTTCGAGGTGCCGCGCGCACC
GGAGCGCGCGGCGCGGCTGGCATCGGTGCTCGAAGTGATCTATCTGGTTTTCAACGAAGGCTATTCGGCGACGGCGGGCG
ACGACTGGATGCGCCCCGCGCTGACCGACGAGGCGCTTCGGCTCGGGCGCGTGCTCGCCGGGCTCGCGCCCGACGAGAGC
GAGGTGCACGGGCTTGTCGCGCTGATGGAGATCCAGGCGTCGCGGATGCATGCGCGGGTCGATGCGCAGGGCCGCCCCGT
GCTGCTGCTCGATCAGGATCGCAGCCGCTGGGATCCGCTGCTGATCCGGCGCGGGCTCGCCGCGCTCGCACGCTCGGAGG
CGCTCGGCGGCGCGAGCGGGCCCTATGCGCTGCAGGCGGCGCTCGCCGCATGTCACGCGCGTGCGCGCCATGCCGACGAT
ACCGACTGGGAGCAGATCGTCGCGCTCTACGACGCGCTCGCGCAGGTCGCGCCCTCGCCCGTCGTCGAGCTGAATCGCGC
GGTTGCGGTCGGCATGGCGTTCGGGCCGGCGGCGGGGCTCGAGATCGTCGACGCGCTCGCGGCCGACCCGGCGCTCGCGC
GCTATCACTGGCTGCCGAGCGTGCGCGGCGATCTGCTCGCGAAGCTCGGGCGGCGCGCCGAGGCGCAGGCCGAATTCCAG
CGCGCGGCCGACATGACGCTCAATGCGCGCGAGCGTGAGATGCTGCTTGCGCGCGCGACGCAGCGGTGA

Upstream 100 bases:

>100_bases
TGTCGAAGCTGATGCGGGCGTGCTTGAGCATCGGCAAGATGGTCGGCAAGGACTTTTATACGCGGCTCGCGAACCCCAAG
GCGCTCGCCGAAGGGCGCGC

Downstream 100 bases:

>100_bases
GGTGAAGCGCGTGAGACGGCGCGCGTGCCGGGTTCCGGGCACCGTCGGTCGATGGGGGGGCGCGGGCGGAGTGCGCGGTG
TTCGGACCAGGCGCGGCGCA

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MMDAAVHRAIDAVWRIEAARIIAHVARLVRDVGVAEELAQDALVAALEHWPSGGVPDNPGAWLMTAAKRRALDHLRQHAL
HARKREQIGLDLDALGAHVAPDVADVFEAARDDDIGDDLLRLVFTACHPVLSTDARVALTLRLLGGLTTGEIARAFLTPE
PTIAQRIVRAKRTLSAAKVPFEVPRAPERAARLASVLEVIYLVFNEGYSATAGDDWMRPALTDEALRLGRVLAGLAPDES
EVHGLVALMEIQASRMHARVDAQGRPVLLLDQDRSRWDPLLIRRGLAALARSEALGGASGPYALQAALAACHARARHADD
TDWEQIVALYDALAQVAPSPVVELNRAVAVGMAFGPAAGLEIVDALAADPALARYHWLPSVRGDLLAKLGRRAEAQAEFQ
RAADMTLNAREREMLLARATQR

Sequences:

>Translated_422_residues
MMDAAVHRAIDAVWRIEAARIIAHVARLVRDVGVAEELAQDALVAALEHWPSGGVPDNPGAWLMTAAKRRALDHLRQHAL
HARKREQIGLDLDALGAHVAPDVADVFEAARDDDIGDDLLRLVFTACHPVLSTDARVALTLRLLGGLTTGEIARAFLTPE
PTIAQRIVRAKRTLSAAKVPFEVPRAPERAARLASVLEVIYLVFNEGYSATAGDDWMRPALTDEALRLGRVLAGLAPDES
EVHGLVALMEIQASRMHARVDAQGRPVLLLDQDRSRWDPLLIRRGLAALARSEALGGASGPYALQAALAACHARARHADD
TDWEQIVALYDALAQVAPSPVVELNRAVAVGMAFGPAAGLEIVDALAADPALARYHWLPSVRGDLLAKLGRRAEAQAEFQ
RAADMTLNAREREMLLARATQR
>Mature_422_residues
MMDAAVHRAIDAVWRIEAARIIAHVARLVRDVGVAEELAQDALVAALEHWPSGGVPDNPGAWLMTAAKRRALDHLRQHAL
HARKREQIGLDLDALGAHVAPDVADVFEAARDDDIGDDLLRLVFTACHPVLSTDARVALTLRLLGGLTTGEIARAFLTPE
PTIAQRIVRAKRTLSAAKVPFEVPRAPERAARLASVLEVIYLVFNEGYSATAGDDWMRPALTDEALRLGRVLAGLAPDES
EVHGLVALMEIQASRMHARVDAQGRPVLLLDQDRSRWDPLLIRRGLAALARSEALGGASGPYALQAALAACHARARHADD
TDWEQIVALYDALAQVAPSPVVELNRAVAVGMAFGPAAGLEIVDALAADPALARYHWLPSVRGDLLAKLGRRAEAQAEFQ
RAADMTLNAREREMLLARATQR

Specific function: Unknown

COG id: COG4941

COG function: function code K; Predicted RNA polymerase sigma factor containing a TPR repeat domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008940
- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 45634; Mature: 45634

Theoretical pI: Translated: 6.46; Mature: 6.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMDAAVHRAIDAVWRIEAARIIAHVARLVRDVGVAEELAQDALVAALEHWPSGGVPDNPG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCC
AWLMTAAKRRALDHLRQHALHARKREQIGLDLDALGAHVAPDVADVFEAARDDDIGDDLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHCCCCCHHHHH
RLVFTACHPVLSTDARVALTLRLLGGLTTGEIARAFLTPEPTIAQRIVRAKRTLSAAKVP
HHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
FEVPRAPERAARLASVLEVIYLVFNEGYSATAGDDWMRPALTDEALRLGRVLAGLAPDES
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCHHHHHHHHHHHHHHCCCCCHH
EVHGLVALMEIQASRMHARVDAQGRPVLLLDQDRSRWDPLLIRRGLAALARSEALGGASG
HHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
PYALQAALAACHARARHADDTDWEQIVALYDALAQVAPSPVVELNRAVAVGMAFGPAAGL
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
EIVDALAADPALARYHWLPSVRGDLLAKLGRRAEAQAEFQRAADMTLNAREREMLLARAT
HHHHHHHCCHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
QR
CC
>Mature Secondary Structure
MMDAAVHRAIDAVWRIEAARIIAHVARLVRDVGVAEELAQDALVAALEHWPSGGVPDNPG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCC
AWLMTAAKRRALDHLRQHALHARKREQIGLDLDALGAHVAPDVADVFEAARDDDIGDDLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHCCCCCHHHHH
RLVFTACHPVLSTDARVALTLRLLGGLTTGEIARAFLTPEPTIAQRIVRAKRTLSAAKVP
HHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
FEVPRAPERAARLASVLEVIYLVFNEGYSATAGDDWMRPALTDEALRLGRVLAGLAPDES
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCHHHHHHHHHHHHHHCCCCCHH
EVHGLVALMEIQASRMHARVDAQGRPVLLLDQDRSRWDPLLIRRGLAALARSEALGGASG
HHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
PYALQAALAACHARARHADDTDWEQIVALYDALAQVAPSPVVELNRAVAVGMAFGPAAGL
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
EIVDALAADPALARYHWLPSVRGDLLAKLGRRAEAQAEFQRAADMTLNAREREMLLARAT
HHHHHHHCCHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
QR
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430; 7751302 [H]