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The map label for this gene is sctC

Identifier: 53722417

GI number: 53722417

Start: 1903732

End: 1905498

Strand: Reverse

Name: sctC

Synonym: BPSS1390

Alternate gene names: 53722417

Gene position: 1905498-1903732 (Counterclockwise)

Preceding gene: 53722418

Following gene: 53722416

Centisome position: 60.05

GC content: 62.14

Gene sequence:

>1767_bases
ATGAAAGCGAAAGCGCTGTTGTGCGCGGCATGGTGCGTCGCGATATTTGGCACCATCGGGATCGGCGCCGCGAACGCGAT
GCCCGTGCGCTGGAGGAGTACGGTCGTGCATGTCGTGCTGGAAGGCAAGGATCTAAAGGACGTACTGAGGGATTTTGCCG
CGAGTCAAGGCGTCGCGACATCGATTGCCGGCAATGTTCAAGGTACCGTCACGGGCCGATTCGATCTGTCGCCCCAGCGC
TTTCTCGATACGCTCGCCGCGACTTTCGGATTCGTGTGGTTCTACGATGGCAATATCTTGTCGATCACAAATGCAAACGA
TATGACGCGGCAAGTCTTGCCGCTCGATCACGCTTCGATCGGCGAATTGCGTTCCGCGTTGCGCCAGATCGGCATGGACG
ACAAGCGCTTTCCGATCTTCTACGACGAGGTGTCCGGCACCGTGCTCGTCAGCGGTCCCGCCCAGTATGTCCAGATCGTG
ACCGATATCGCGCAGCGGCTCGACACGCTGTCGGGCCGCCGAAACGGCTCGACAATCCGCATCTTCAAGTTGAAGCACGC
GTGGGCGGCCGATCGCAACGTGCAGATCGACGGAAACACGGTGACCATGCCCGGGATCGCGACCGTGCTGGCGAACCTGT
ACCGCGTGCGAGGAAGGGCGGGAACCGGTCAGTCGAGTGCGGCACCCGGCGTGCAGCGGGTGCAGCCGATGGGCGACGTT
TCCGGCAGTGCGTATGGCGGGAACCGGCTGATGCCTCCATTGCCGCCGAGCATGATGGGGGGAGGCCGCGGCGACGCATT
CGCCAAGGGGGCGTCGATCGACGGCGAAAGCGGGGGAGCCGCGAGCGCCGCGCCTGGCGGAGCGCCCCGGACGGAGGAGG
TGTCCGCGGAGCGCGACGAGTTGCCGATCATCCAGCCCGATCCGATGACGAACTCGGTGTTGATCCGCGATTTGCCCGAT
CGCCTTGCACAGTATGCGCCGCTCATCCAGCAACTCGACATACGGCCCAGGCTTATCGAAATCCAGGCGCACATCATGGA
GATCGACGACGACTTGCTTCGGGAGATCGGCGTCGACTGGCGCGCGCATAACAGCCACGGCGATATTCAGACAGGCACGG
GCAATACGGCGCAAAACGATTATTCGGGCGGCCAGATCAATCCGTTCTTCGGTACGACGACGCTTGCGGGCAACGCGGTT
GTCAACGCGGCGCCCGCCGGCGTGTCGGTCACGGCGGTCGTCGGGGACGCGGCTCGATATTTGATGGCGCGGGTGAGCGC
GCTGCAGTCGACCTCGAAGGTGAAGATCGATGCATCGCCACTTGTCGCGACGCTCGACAATTCGGAGGCCGTAATGGATA
ACACGACGCGCTTTTTCGTCAAGGTATCGGGTTACGCGTCGGCGGAACTCTACAGCGTGTCGACGGGTGTTTCGCTGCGC
GTTCTGCCGATGATCGTGCAAGACGGTAGCGAGACCCGGATCAAGATGAATGTTCACGTGACGGACGGGCAACTGACAGG
CGACCAGGTCGATAACCTGCCGGTCATCACGAGCAGCGAAATCAATACGCAAGCGTTCGTCGGTCAGGGGCAGAGCCTGC
TGATCGCCGGCTACAGTACGGACAAGCGCGCGAACGGTGTGGCGGGCGTGCCTTGGCTGTCGAAGATCCCATTGCTCGGT
GCGCTGTTTCGATACCACAGCGATTCGCAGAACCACATGGAGCGCGTATTCCTGTTGTCGCCGCGAATTATCGATCCGGG
CACGTGA

Upstream 100 bases:

>100_bases
TCGTGATCGCCTATCGGAAGGAGTACGACGAAACCCCTTCGGAAACGCTCGCGCGCTGATTCAAGATGATTCTCCTGCGC
TCACTCAATTCCAAAGAACG

Downstream 100 bases:

>100_bases
GCCCCGCGCGCGCGGGTTGCACCGCGTCGGCGCTCGTCTACGCTCTCCGTATTCTGTTCGCCGACATCGGCGCGCGCGCG
AACCGGGGCTCGTTTTGTCC

Product: type III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 588; Mature: 588

Protein sequence:

>588_residues
MKAKALLCAAWCVAIFGTIGIGAANAMPVRWRSTVVHVVLEGKDLKDVLRDFAASQGVATSIAGNVQGTVTGRFDLSPQR
FLDTLAATFGFVWFYDGNILSITNANDMTRQVLPLDHASIGELRSALRQIGMDDKRFPIFYDEVSGTVLVSGPAQYVQIV
TDIAQRLDTLSGRRNGSTIRIFKLKHAWAADRNVQIDGNTVTMPGIATVLANLYRVRGRAGTGQSSAAPGVQRVQPMGDV
SGSAYGGNRLMPPLPPSMMGGGRGDAFAKGASIDGESGGAASAAPGGAPRTEEVSAERDELPIIQPDPMTNSVLIRDLPD
RLAQYAPLIQQLDIRPRLIEIQAHIMEIDDDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQINPFFGTTTLAGNAV
VNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATLDNSEAVMDNTTRFFVKVSGYASAELYSVSTGVSLR
VLPMIVQDGSETRIKMNVHVTDGQLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLG
ALFRYHSDSQNHMERVFLLSPRIIDPGT

Sequences:

>Translated_588_residues
MKAKALLCAAWCVAIFGTIGIGAANAMPVRWRSTVVHVVLEGKDLKDVLRDFAASQGVATSIAGNVQGTVTGRFDLSPQR
FLDTLAATFGFVWFYDGNILSITNANDMTRQVLPLDHASIGELRSALRQIGMDDKRFPIFYDEVSGTVLVSGPAQYVQIV
TDIAQRLDTLSGRRNGSTIRIFKLKHAWAADRNVQIDGNTVTMPGIATVLANLYRVRGRAGTGQSSAAPGVQRVQPMGDV
SGSAYGGNRLMPPLPPSMMGGGRGDAFAKGASIDGESGGAASAAPGGAPRTEEVSAERDELPIIQPDPMTNSVLIRDLPD
RLAQYAPLIQQLDIRPRLIEIQAHIMEIDDDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQINPFFGTTTLAGNAV
VNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATLDNSEAVMDNTTRFFVKVSGYASAELYSVSTGVSLR
VLPMIVQDGSETRIKMNVHVTDGQLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLG
ALFRYHSDSQNHMERVFLLSPRIIDPGT
>Mature_588_residues
MKAKALLCAAWCVAIFGTIGIGAANAMPVRWRSTVVHVVLEGKDLKDVLRDFAASQGVATSIAGNVQGTVTGRFDLSPQR
FLDTLAATFGFVWFYDGNILSITNANDMTRQVLPLDHASIGELRSALRQIGMDDKRFPIFYDEVSGTVLVSGPAQYVQIV
TDIAQRLDTLSGRRNGSTIRIFKLKHAWAADRNVQIDGNTVTMPGIATVLANLYRVRGRAGTGQSSAAPGVQRVQPMGDV
SGSAYGGNRLMPPLPPSMMGGGRGDAFAKGASIDGESGGAASAAPGGAPRTEEVSAERDELPIIQPDPMTNSVLIRDLPD
RLAQYAPLIQQLDIRPRLIEIQAHIMEIDDDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQINPFFGTTTLAGNAV
VNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATLDNSEAVMDNTTRFFVKVSGYASAELYSVSTGVSLR
VLPMIVQDGSETRIKMNVHVTDGQLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLG
ALFRYHSDSQNHMERVFLLSPRIIDPGT

Specific function: Involved in the secretion of a proteinaceous elicitor of the hypersensitivity response in plants [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=287, Percent_Identity=28.5714285714286, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI87082242, Length=512, Percent_Identity=22.65625, Blast_Score=69, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR004845
- InterPro:   IPR003522 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 62645; Mature: 62645

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: PS00875 T2SP_D

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAKALLCAAWCVAIFGTIGIGAANAMPVRWRSTVVHVVLEGKDLKDVLRDFAASQGVAT
CCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCEEEEEEECCCCHHHHHHHHHHCCCCEE
SIAGNVQGTVTGRFDLSPQRFLDTLAATFGFVWFYDGNILSITNANDMTRQVLPLDHASI
EECCCCEEEEEEEECCCHHHHHHHHHHHHCEEEEECCCEEEEECCCCHHHHHCCCCCCCH
GELRSALRQIGMDDKRFPIFYDEVSGTVLVSGPAQYVQIVTDIAQRLDTLSGRRNGSTIR
HHHHHHHHHCCCCCCCCCEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCEEE
IFKLKHAWAADRNVQIDGNTVTMPGIATVLANLYRVRGRAGTGQSSAAPGVQRVQPMGDV
EEEEEECCCCCCEEEECCCEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCC
SGSAYGGNRLMPPLPPSMMGGGRGDAFAKGASIDGESGGAASAAPGGAPRTEEVSAERDE
CCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
LPIIQPDPMTNSVLIRDLPDRLAQYAPLIQQLDIRPRLIEIQAHIMEIDDDLLREIGVDW
CCEECCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHCCHHHHHHHCCCE
RAHNSHGDIQTGTGNTAQNDYSGGQINPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARY
EEECCCCCEECCCCCCCCCCCCCCEECCCCCCEEECCCCEEECCCCCEEEEEEHHHHHHH
LMARVSALQSTSKVKIDASPLVATLDNSEAVMDNTTRFFVKVSGYASAELYSVSTGVSLR
HHHHHHHHHCCCEEEEECCCEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEECCCCEEE
VLPMIVQDGSETRIKMNVHVTDGQLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYST
EEEEEEECCCCCEEEEEEEEECCEECCCCCCCCCEEECCCCCCHHEECCCCEEEEEECCC
DKRANGVAGVPWLSKIPLLGALFRYHSDSQNHMERVFLLSPRIIDPGT
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHEEEEECCEECCCCC
>Mature Secondary Structure
MKAKALLCAAWCVAIFGTIGIGAANAMPVRWRSTVVHVVLEGKDLKDVLRDFAASQGVAT
CCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCEEEEEEECCCCHHHHHHHHHHCCCCEE
SIAGNVQGTVTGRFDLSPQRFLDTLAATFGFVWFYDGNILSITNANDMTRQVLPLDHASI
EECCCCEEEEEEEECCCHHHHHHHHHHHHCEEEEECCCEEEEECCCCHHHHHCCCCCCCH
GELRSALRQIGMDDKRFPIFYDEVSGTVLVSGPAQYVQIVTDIAQRLDTLSGRRNGSTIR
HHHHHHHHHCCCCCCCCCEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCEEE
IFKLKHAWAADRNVQIDGNTVTMPGIATVLANLYRVRGRAGTGQSSAAPGVQRVQPMGDV
EEEEEECCCCCCEEEECCCEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCC
SGSAYGGNRLMPPLPPSMMGGGRGDAFAKGASIDGESGGAASAAPGGAPRTEEVSAERDE
CCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
LPIIQPDPMTNSVLIRDLPDRLAQYAPLIQQLDIRPRLIEIQAHIMEIDDDLLREIGVDW
CCEECCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHCCHHHHHHHCCCE
RAHNSHGDIQTGTGNTAQNDYSGGQINPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARY
EEECCCCCEECCCCCCCCCCCCCCEECCCCCCEEECCCCEEECCCCCEEEEEEHHHHHHH
LMARVSALQSTSKVKIDASPLVATLDNSEAVMDNTTRFFVKVSGYASAELYSVSTGVSLR
HHHHHHHHHCCCEEEEECCCEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEECCCCEEE
VLPMIVQDGSETRIKMNVHVTDGQLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYST
EEEEEEECCCCCEEEEEEEEECCEECCCCCCCCCEEECCCCCCHHEECCCCEEEEEECCC
DKRANGVAGVPWLSKIPLLGALFRYHSDSQNHMERVFLLSPRIIDPGT
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHEEEEECCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1472716; 7623665; 11823852 [H]