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The map label for this gene is fadE25 [H]

Identifier: 53722295

GI number: 53722295

Start: 1737494

End: 1739254

Strand: Reverse

Name: fadE25 [H]

Synonym: BPSS1273

Alternate gene names: 53722295

Gene position: 1739254-1737494 (Counterclockwise)

Preceding gene: 53722296

Following gene: 53722294

Centisome position: 54.81

GC content: 69.96

Gene sequence:

>1761_bases
ATGAGCCTGAACCATGCGCCGTTCGCGCTCGCGAGCGCGTTCGACCGTTATCTCGGCGATCCGTCGATGCCCGACAACGC
GTTTTCATACGCGCGATGCGCGCAGCTGGATGCGCACGAGCGCTTTCCCGACGCCGTCTGCGCGATGCTGTCCCAGTGGG
GGCTGCATCGCTATTACGTGCCCGAGCGGTTCGGCGGCATGCTGCGCGATTTCGAGCAGCCGCTGCAGTTGATCCGGATG
CTCGCGCGCCGCGACCTGACCGTCGCGATCGGCCACGGCAAGACTTTTCTCGGCGCGGTTTGCGTGTGGGTGGGCGCGAC
GCACGAGCAGGCGTCGCGCTTCGCGCGCCGGATAGGCGACGGCGCGATCGTATCGTGGGGGCTGACCGAGCGCGAGCACG
GCAGCGATCTGCTGCGCAGCGATACGTATGCCGAAGCCGACGGCGACGAATACCGGATCGCCGGCGAGAAATGGCTGATC
AACAACGCGACGCGCGGCGACATGATCAGCCTGCTCGCCCGCACGCGGCGCGAAGGCGGCCCCCGCGGCTTCGACATGCT
GCTCGTCGACAAGCACGCGCTGTCCCAAGGCCGCTTGCGCCCGCTGCCGAAGGAGCGCACGCACGGCATCCGCGGCGCCG
ATATCAGCGGCATCGCGTTCGACGATGCGAGGATACCGGCGAGCGCGCGAATCGGCGTGCGCGGCGCGGGCCTCGAAACC
GTGCTCAAGGGCTTGCAGCTCACGCGCACGCTTTGCGCGTCGCTGTCGCTCGGCGCGGGCGATCATGCGCTGCGGCTCGC
GCTGGGCTTCGCGTGCGAGCGCCGGCTGTACGGCCGCACGCTGATCGATCTGCCGAACGCGCGGCGCACGCTGATCGACG
CGTATACGGATCAACTGCTCGCCGAAGCCGCCGCGCTCGTCGGGGCGCGAAGCATCCAGGCATTGCCCGACGAGATGAGC
GTGACGTCCGCGGTCGTCAAGTATCTCGTGCCCACGCGCGCGGAGGCGATGCTCGACACGCTCGCCGAGTTGCTCGGCGC
GCGTGCGTTCTTAGCCGATACATACGCGCACGGGATGTTCCAGAAAGTGCAGCGCGACAATCGGATCGTGTCGTTGTTCG
ACGGAAACACGCTCGTCAATCTGAACGCGATCGTCAATGCGTTCCAGACGCTGGCGAAGCGCTATCGCGGGCGCGACGGC
GCCGACGCCGGACAGGCGCTCGCCGCGTTCGATCTGGGCATGCCGCTGCCGGCGTTCGATCGCGGCGCGCTCAGCCTCGT
GTCGCGGCACGGCTGCCGCGTCGTCGGCGCGTTGCCGGCGTTGGCCGACGGCATCGCGCAGCGCGCGGCATGCGAGCCGG
CGCTGTCGCGCCTGGTGGTGCCGGTTCGCAGGCTCGCCGCGCTGACGGACGACGTGCACCGGCGGATGCTCGCGTGCCCG
CCGGTTCGCGTGCACGTGCCCGTCGAACAATTCGAGCTCGCGAAGCGCTATGCGCTGTGCCATGCGGCGGCGTCGGCGCT
CGGGCTGTGGTGGCATACGCGGCATCGCGTCGGCGAGGCGAGCGCCGCGCCGCCGTGGCGGGACGGCCTGTGGCTGCGCG
CGGTGCTGCGGCGGGTGCGCGTCGCGCTGGGCGACGCAGCCGATTTCGACGACGAGGCGGGCGACGCATTATGGCGCGCG
CTGCTGCGTCAGCATCGCGACGGCCTGCTGTTTTCGCTGCTGCCGTGCGAGCTTGCCGAGCATCGAGGGGAGGCCGCATG
A

Upstream 100 bases:

>100_bases
CGCGGCTGCGCGTGCTGCACGAGGATATCCAGGTGCCGGTTCGGTCGTTGCGTGTGGCCGCGGGCGAGGGCGTCGCGCAG
GATGCCTCCCGGGGCGCCGC

Downstream 100 bases:

>100_bases
GCGCCGATGCGATCTTGACCGGGCGCGAGCGCGCGCACCGCCGCGTCGACGCGGCCGGGCCGCATGCCGATCTCGAGCAA
GCGCTCGGCGATCCGTTCGA

Product: acyl-CoA dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 586; Mature: 585

Protein sequence:

>586_residues
MSLNHAPFALASAFDRYLGDPSMPDNAFSYARCAQLDAHERFPDAVCAMLSQWGLHRYYVPERFGGMLRDFEQPLQLIRM
LARRDLTVAIGHGKTFLGAVCVWVGATHEQASRFARRIGDGAIVSWGLTEREHGSDLLRSDTYAEADGDEYRIAGEKWLI
NNATRGDMISLLARTRREGGPRGFDMLLVDKHALSQGRLRPLPKERTHGIRGADISGIAFDDARIPASARIGVRGAGLET
VLKGLQLTRTLCASLSLGAGDHALRLALGFACERRLYGRTLIDLPNARRTLIDAYTDQLLAEAAALVGARSIQALPDEMS
VTSAVVKYLVPTRAEAMLDTLAELLGARAFLADTYAHGMFQKVQRDNRIVSLFDGNTLVNLNAIVNAFQTLAKRYRGRDG
ADAGQALAAFDLGMPLPAFDRGALSLVSRHGCRVVGALPALADGIAQRAACEPALSRLVVPVRRLAALTDDVHRRMLACP
PVRVHVPVEQFELAKRYALCHAAASALGLWWHTRHRVGEASAAPPWRDGLWLRAVLRRVRVALGDAADFDDEAGDALWRA
LLRQHRDGLLFSLLPCELAEHRGEAA

Sequences:

>Translated_586_residues
MSLNHAPFALASAFDRYLGDPSMPDNAFSYARCAQLDAHERFPDAVCAMLSQWGLHRYYVPERFGGMLRDFEQPLQLIRM
LARRDLTVAIGHGKTFLGAVCVWVGATHEQASRFARRIGDGAIVSWGLTEREHGSDLLRSDTYAEADGDEYRIAGEKWLI
NNATRGDMISLLARTRREGGPRGFDMLLVDKHALSQGRLRPLPKERTHGIRGADISGIAFDDARIPASARIGVRGAGLET
VLKGLQLTRTLCASLSLGAGDHALRLALGFACERRLYGRTLIDLPNARRTLIDAYTDQLLAEAAALVGARSIQALPDEMS
VTSAVVKYLVPTRAEAMLDTLAELLGARAFLADTYAHGMFQKVQRDNRIVSLFDGNTLVNLNAIVNAFQTLAKRYRGRDG
ADAGQALAAFDLGMPLPAFDRGALSLVSRHGCRVVGALPALADGIAQRAACEPALSRLVVPVRRLAALTDDVHRRMLACP
PVRVHVPVEQFELAKRYALCHAAASALGLWWHTRHRVGEASAAPPWRDGLWLRAVLRRVRVALGDAADFDDEAGDALWRA
LLRQHRDGLLFSLLPCELAEHRGEAA
>Mature_585_residues
SLNHAPFALASAFDRYLGDPSMPDNAFSYARCAQLDAHERFPDAVCAMLSQWGLHRYYVPERFGGMLRDFEQPLQLIRML
ARRDLTVAIGHGKTFLGAVCVWVGATHEQASRFARRIGDGAIVSWGLTEREHGSDLLRSDTYAEADGDEYRIAGEKWLIN
NATRGDMISLLARTRREGGPRGFDMLLVDKHALSQGRLRPLPKERTHGIRGADISGIAFDDARIPASARIGVRGAGLETV
LKGLQLTRTLCASLSLGAGDHALRLALGFACERRLYGRTLIDLPNARRTLIDAYTDQLLAEAAALVGARSIQALPDEMSV
TSAVVKYLVPTRAEAMLDTLAELLGARAFLADTYAHGMFQKVQRDNRIVSLFDGNTLVNLNAIVNAFQTLAKRYRGRDGA
DAGQALAAFDLGMPLPAFDRGALSLVSRHGCRVVGALPALADGIAQRAACEPALSRLVVPVRRLAALTDDVHRRMLACPP
VRVHVPVEQFELAKRYALCHAAASALGLWWHTRHRVGEASAAPPWRDGLWLRAVLRRVRVALGDAADFDDEAGDALWRAL
LRQHRDGLLFSLLPCELAEHRGEAA

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557233, Length=354, Percent_Identity=25.9887005649718, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI187960098, Length=354, Percent_Identity=23.728813559322, Blast_Score=87, Evalue=4e-17,
Organism=Homo sapiens, GI4557231, Length=354, Percent_Identity=23.728813559322, Blast_Score=87, Evalue=5e-17,
Organism=Homo sapiens, GI7656849, Length=390, Percent_Identity=26.4102564102564, Blast_Score=86, Evalue=7e-17,
Organism=Homo sapiens, GI4501859, Length=352, Percent_Identity=22.7272727272727, Blast_Score=82, Evalue=2e-15,
Organism=Homo sapiens, GI21361497, Length=361, Percent_Identity=21.8836565096953, Blast_Score=78, Evalue=3e-14,
Organism=Homo sapiens, GI76496475, Length=350, Percent_Identity=21.7142857142857, Blast_Score=77, Evalue=5e-14,
Organism=Homo sapiens, GI4557235, Length=350, Percent_Identity=21.7142857142857, Blast_Score=77, Evalue=5e-14,
Organism=Homo sapiens, GI4501857, Length=193, Percent_Identity=26.4248704663212, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI226958414, Length=344, Percent_Identity=21.2209302325581, Blast_Score=67, Evalue=4e-11,
Organism=Homo sapiens, GI226958412, Length=344, Percent_Identity=21.2209302325581, Blast_Score=67, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17508101, Length=358, Percent_Identity=24.5810055865922, Blast_Score=102, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17569725, Length=381, Percent_Identity=22.3097112860892, Blast_Score=95, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17506239, Length=356, Percent_Identity=23.5955056179775, Blast_Score=93, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17570075, Length=326, Percent_Identity=24.8466257668712, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17534899, Length=374, Percent_Identity=23.5294117647059, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71985184, Length=346, Percent_Identity=22.5433526011561, Blast_Score=83, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17538396, Length=334, Percent_Identity=22.7544910179641, Blast_Score=80, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI71982178, Length=225, Percent_Identity=24, Blast_Score=79, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI32563615, Length=228, Percent_Identity=25.4385964912281, Blast_Score=79, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI71990804, Length=266, Percent_Identity=22.9323308270677, Blast_Score=76, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71985192, Length=264, Percent_Identity=23.1060606060606, Blast_Score=70, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17533517, Length=291, Percent_Identity=24.7422680412371, Blast_Score=69, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17551932, Length=411, Percent_Identity=22.8710462287105, Blast_Score=69, Evalue=9e-12,
Organism=Drosophila melanogaster, GI281363737, Length=377, Percent_Identity=23.342175066313, Blast_Score=89, Evalue=8e-18,
Organism=Drosophila melanogaster, GI24666513, Length=354, Percent_Identity=22.8813559322034, Blast_Score=87, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24660351, Length=351, Percent_Identity=23.6467236467236, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24646207, Length=357, Percent_Identity=24.6498599439776, Blast_Score=82, Evalue=1e-15,
Organism=Drosophila melanogaster, GI21356377, Length=355, Percent_Identity=22.5352112676056, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI21355753, Length=252, Percent_Identity=23.015873015873, Blast_Score=67, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 64158; Mature: 64027

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLNHAPFALASAFDRYLGDPSMPDNAFSYARCAQLDAHERFPDAVCAMLSQWGLHRYYV
CCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHCCHHHHHHHHHHCCCCEEEC
PERFGGMLRDFEQPLQLIRMLARRDLTVAIGHGKTFLGAVCVWVGATHEQASRFARRIGD
CHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHCCC
GAIVSWGLTEREHGSDLLRSDTYAEADGDEYRIAGEKWLINNATRGDMISLLARTRREGG
CCEEECCCCCCCCCCHHHHCCCCCCCCCCCEEECCCEEEECCCCCHHHHHHHHHHHHCCC
PRGFDMLLVDKHALSQGRLRPLPKERTHGIRGADISGIAFDDARIPASARIGVRGAGLET
CCCCEEEEEEHHHHCCCCCCCCCHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHH
VLKGLQLTRTLCASLSLGAGDHALRLALGFACERRLYGRTLIDLPNARRTLIDAYTDQLL
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHH
AEAAALVGARSIQALPDEMSVTSAVVKYLVPTRAEAMLDTLAELLGARAFLADTYAHGMF
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QKVQRDNRIVSLFDGNTLVNLNAIVNAFQTLAKRYRGRDGADAGQALAAFDLGMPLPAFD
HHHHCCCCEEEEECCCEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCC
RGALSLVSRHGCRVVGALPALADGIAQRAACEPALSRLVVPVRRLAALTDDVHRRMLACP
HHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PVRVHVPVEQFELAKRYALCHAAASALGLWWHTRHRVGEASAAPPWRDGLWLRAVLRRVR
CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
VALGDAADFDDEAGDALWRALLRQHRDGLLFSLLPCELAEHRGEAA
HHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SLNHAPFALASAFDRYLGDPSMPDNAFSYARCAQLDAHERFPDAVCAMLSQWGLHRYYV
CCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHCCHHHHHHHHHHCCCCEEEC
PERFGGMLRDFEQPLQLIRMLARRDLTVAIGHGKTFLGAVCVWVGATHEQASRFARRIGD
CHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHCCC
GAIVSWGLTEREHGSDLLRSDTYAEADGDEYRIAGEKWLINNATRGDMISLLARTRREGG
CCEEECCCCCCCCCCHHHHCCCCCCCCCCCEEECCCEEEECCCCCHHHHHHHHHHHHCCC
PRGFDMLLVDKHALSQGRLRPLPKERTHGIRGADISGIAFDDARIPASARIGVRGAGLET
CCCCEEEEEEHHHHCCCCCCCCCHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHH
VLKGLQLTRTLCASLSLGAGDHALRLALGFACERRLYGRTLIDLPNARRTLIDAYTDQLL
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHH
AEAAALVGARSIQALPDEMSVTSAVVKYLVPTRAEAMLDTLAELLGARAFLADTYAHGMF
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QKVQRDNRIVSLFDGNTLVNLNAIVNAFQTLAKRYRGRDGADAGQALAAFDLGMPLPAFD
HHHHCCCCEEEEECCCEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCC
RGALSLVSRHGCRVVGALPALADGIAQRAACEPALSRLVVPVRRLAALTDDVHRRMLACP
HHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PVRVHVPVEQFELAKRYALCHAAASALGLWWHTRHRVGEASAAPPWRDGLWLRAVLRRVR
CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
VALGDAADFDDEAGDALWRALLRQHRDGLLFSLLPCELAEHRGEAA
HHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]